Query= MSMg01no062_p19.b1 MSMg01no062_p19.b1 CHROMAT_FILE:
MSMg01no062_p19.b1 PHD_FILE: MSMg01no062_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:09 2005
(721 letters)
>mm_chr12_54105234_54106354
Length = 1121
Score = 1265 bits (654), Expect = 0.0
Identities = 683/697 (97%), Gaps = 10/697 (1%)
Strand = Plus / Minus
Query: 1 attcagncttatggactgagcaactatccct----ttcttggacttgtcacccccagcca 56
|||||| ||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 691 attcagccttatggactgagcaacta----tggggttcttggacttgtcattcccagcca 636
Query: 57 gccatttttgaattaactgatccacagcctataagtcattctaagaaatttcctctgtaa 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 635 gccatttttgaattaactgatccacagcctataagtcattctaagaaatttcctctgt-a 577
Query: 117 cccccctctctctctgcatcttttgatgggctaagcttcttgaaaacattaacattaatt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cccccctctctctctgcatcttttgatgggctaagcttcttgaaaacattaacattaatt 517
Query: 177 ttgacaactctcctagagaagcccatagccatattttctggtatgtcttacttctaaatg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttgacaactctcctagagaagcccatagccatattttctggtatgtcttacttctaaatg 457
Query: 237 ttcctcttgtaagctgcacccttaaatatatatgaaaatatctttattaaacaaattctt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttcctcttgtaagctgcacccttaaatatatatgaaaatatctttattaaacaaattctt 397
Query: 297 cttcatactggctagtcttgaaattcttttctgcatcaaatccaggaatcctagttggtt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttcatactggctagtcttgaaattcttttctgcatcaaatccaggaatcctagttggtt 337
Query: 357 ctgagtcaagtttacctaaaagtttgttttgagactaagtctcactacatagtcctggct 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgagtcaattttacctaaaagtttgttttgagactaagtctcactacatagtcctggct 277
Query: 417 ggcctggaactcactttgtaaattgggctggcttcaaactaataaaactctgcctctgcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggcctggaactcactttgtaaattgggctggcttcaaactaataaaactctgcctctgcc 217
Query: 477 tcctcagtgctgagattaaatgtatatgccatcacgtttgatgaggtccctaaaggttta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tcctcagtgctgagattaaatgtatatgccatcacgtttgatgaggtccctaaaggttta 157
Query: 537 ggaaaactaaataggctgctgagagggatgcagggccatacctctgtcctatccctcatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ggaaaactaaataggctgctgagagggatgcagggccatacctctgtcctatccctcatt 97
Query: 597 gataacttcttcagggcgtgtctgggatttctctgaagcattgttgaagagcctttatta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gataacttcttcagggcgtgtctgggatttctctgaagcattgttgaagagcctttatta 37
Query: 657 caaaaatagttttctaagtgactgcttccataggatt 693
||||||||| |||||||||||||||||||||||||||
Sbjct: 36 caaaaatag-tttctaagtgactgcttccataggatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_p19.g1 MSMg01no062_p19.g1 CHROMAT_FILE:
MSMg01no062_p19.g1 PHD_FILE: MSMg01no062_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:09 2005
(659 letters)
>mm_chr12_53930122_53931181
Length = 1060
Score = 1100 bits (569), Expect = 0.0
Identities = 638/661 (96%), Gaps = 2/661 (0%)
Strand = Plus / Plus
Query: 1 taaaatcacgaacgggaagacatcatctgtaaacctcttgccaaccccacacaccaccgt 60
|||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 200 taaaatcacgaacgggaagacatcatatgcaaccctcttgccaaaaccacacaccaccgt 259
Query: 61 atatcaatcattctgagaagggtggggagagaggaatgaagaaaaagaagcctaaccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atatcaatcattctgagaagggtggggagagaggaatgaagaaaaagaagcctaaccaca 319
Query: 121 agcaagtctccagatctgccagttttcaggagaggggattgtgctaaacaatgcgagtac 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 agcaagcctccagatctgccagttttcaggagaggggattgtgctaaacaattcgagtac 379
Query: 181 agtaagcaaaaaaaaaaaaaaaaaaaaaaaaaaattg-agtctgggaaactttgcagggc 239
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 380 agtaagcaaaaaaaaaaaaaaaaaaaaaaaaaaaatggagtctgggaaactttgcagggc 439
Query: 240 atacaagcctgttccttcagcagaactccaggaaagagaattcagggatagagcaaatgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atacaagcctgttccttcagcagaactccaggaaagagaattcagggatagagcaaatgt 499
Query: 300 gacaatagaggtaagattaaacgcattaccactcagtggctgtaccccttttcaggtaat 359
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 gacaatagaggtaagaagaaacgcattaccactcagtggctgtacccctttttgggtaat 559
Query: 360 gattaaaaatataaggcataagaacacgacagttgagagagtgcaggcagtaatttatat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gattaaaaatataaggcataagaacacgacagttgagagagtgcaggcagtaatttatat 619
Query: 420 tttaacactaaggagttaactttaaatggaatctacaatggcattgcagttatagttaca 479
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 620 tttaacactaaggagttaactttaaatggaatctacagtggcattgtggttatagttaca 679
Query: 480 aagcaggcagggctcttgtgttttagctgtttgtactgcaatcccactgtgtacca-ctt 538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 680 aagcaggcagggctcttgtgttttagctgtctgtactgcaatcccactgtgtacccgctt 739
Query: 539 cgcttaccagaaagcttaattacaattgggggaactcagataaagtgggactggctgaag 598
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcttaccagaaggcttaattataattgggggaactcagataaagtgggactggctgaag 799
Query: 599 accccatctgatttgctcagtgatggatttatggaagcttatgattctttcttaccctgc 658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 800 accccatctgatttgctcagtgatggattcatggaagcttatgattctttcttaccctgc 859
Query: 659 t 659
|
Sbjct: 860 t 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
