BAC Information

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BAC

Clone NameMSMg01-062P22
Chromosome12 (Build37)
Map Location 113,853,312 - 113,997,873
singlet/doubletdoublet
Overlap gene2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640
Upstream geneMark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179
Downstream genePld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062P22.T7 (MSMg01no062_p22.b1)MSMg01-062P22.TJ (MSMg01no062_p22.g1)
ACCAG288839AG288840
length1,1231,097
length of high quality
(start - end)		349 (407 - 755)323 (408 - 730)
definitionCHROMAT_FILE: MSMg01no062_p22.b1 PHD_FILE: MSMg01no062_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:10 2005CHROMAT_FILE: MSMg01no062_p22.g1 PHD_FILE: MSMg01no062_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,853,312 - 113,853,660)(113,997,551 - 113,997,873)
sequence
NCCGCGCTTTNNNNTACCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCAGCCCAGAGACCCTTTAAAACCCGAGNGGACCCGG
ATACACTTCAGGGTCCCCTTTAAAGCCCTGACCCCCTTTATTGGGCATCT
AGAGCTTCCTGACAAAGGCTGCTGTAACATTCTCATTTCCTTCCCCACAG
GCCTCAGGTCCAGGCCCAAAGCCAAGTGAGTGCTCTCGTCGGCTCAGCAC
ATCGGCTGGATGTGTTGCCTGGAGAGGCTCTTCGGGGCCAGGCTGGGACT
GGGCCCCCGAGAAACCCAAACTCCGTGCCTTACCCAGCCAGGATCCTTGG
GAGCCTTGGGCATTGATGCTGGGACCTGGCCTGGCACCCTGGGCCACCTG
TTTTCTCTTAGCCCCTGCTTTTGCAAACCACTCCCACCCCCTATCGCATG
CACCACAGGGGTGGACGGGAGCCTCCTGCCTGGCTCTAGGGAGATGGATC
ACAGACACCTGCACTGGGGCTGAAACATCCCCTCTCCCCCAACCCCCATG
GCTCAGTTGATTTTTAGCTGAGTGCTGTTTTCTGCATCTTTATTCTGCTA
TGGCTGAGTTGAGGTTAGTGAGGGACTGAGGGAATGCTCGTTGGAAGTGC
TGTGGGTAGGACCTGGCAGGTAGGCTCTAGGGAACAAATAAACAAAAAGT
TCATGTGCACAATGAGTGGTGACCAGACCACTGCAGCTGTCATCTCCCTT
GGTGTGTGCCCAGTGTTGAACAAGCTGCCCCTGCTCAGCCCCTCTCATGT
GTGCACTGTTGAGTCTGCAGGCCAGCAGGGATTTTAACCAATAAAGAGCA
ACCTTGTCTGTCATGAGTGTGGTATTTAGACCATTAGAATAAGAAGTAAC
ACTGGGAGGGCGATCTGAATCCTCTTTTCTTTCCCTGAGGGCACTGTGGG
TGATGTGAACTTAATGTAACCCAATGGATTGTGTAAAAAGCTTTAGTGGT
TAATGCCTTGTTGGTAAAAATTGATTGTTTAAACCTATGTTTATTCTTGT
TAATTTTATTTTCTATTTATATTTCTTTTTTGTTTTTATTCTTTAACCTC
CTGGTTTTTCTTTCTCTCCCCAT

CCGGCTTCTTNNNAACCGATGGNAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTTAGGCCCCTCAGNNNNAGAANGG
NNNNNAAAGNNCCCCTTTAAACTCCTCTCCCNAGNANAGAAGGAAGCATC
CCCAGAACACTTCTGGAGACTGGAAAGGGAACTTCCATTTATCTATATTA
GCTACAACTCAATCTACGCTTGGCCACAGGGCCATACCTAGCTGCAAGGG
AAGCTGGGATCTGGAGGTAGCCATGACTCACCCCGCTGAGGAATTCAGGT
GAGGCTGTTCCCTGGCCTGTCCACAATTATAGGCTTACTAGTGGCTCCTT
GAAGGGATTCTGCCTCCCCTCATAGTCCAAGATGGATCTTCTGAATTTTT
TTTTTGNTGCCTTTAGATCAGGGTCTTGGGAACAGCCCCAACTTTGAATA
GGGTCCAGGTTGACTTCCCTCCTCCTTGGCAGGCAGTAGGCCTCAGTTCA
GGGATATGGCCTCAGAGTGTCCTCAGGGGAAGAGTGCCAACCTCACAGGG
TGGGGAGTACTCCTGAGGAGCAGGGCCTGACCTCAGTGACCCGTGTCCAG
CCTGGTGGGCAAGAAAGTGAGCAGAAAAGGGACCATCCTTCACTTCCTGT
GGGATAATGCCCTAACTTGGCTTTGGGGTTGGTGTGGGTTATCCACCAGA
GAAGACAGCGCAGACATGGGTCTAAGCCAATAGATTCAGGATCCCATTGT
AGCCCCTTTTTTTTCTCAGGGNGAGCTTTTTTTTTAATGCATTTTATACA
ACAAACATATTAATAATATTGAGTATTTTGAGCATCAAATAATACATAAC
AATTTGCTCAATTTTATATTCAAATCCCTTTCTAACCCTAAAAAAATCAT
TAATGAACACTTATTACTATCCCTAACTGAGGACCCTAATTCTAAGGGTG
AAAGCCAAATTGTTCCAAAAAATAAAAAGGAATCCTTTGGAAATTTGGCC
TTAGTAAAGAACCTAATAAAATTTAAAAAGGGAGTTTTTTAAAAATATTT
TCCCAAAGCCCTAAAATGAATACCCCCGTAAAAAATGGGAAAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_p22.b1 MSMg01no062_p22.b1 CHROMAT_FILE:
MSMg01no062_p22.b1 PHD_FILE: MSMg01no062_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:10 2005
         (349 letters)



>mm_chr12_113853112_113853860
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagcccctgcttttgcaaaccactcccaccccctatcgcatgcaccacaggggtggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagcccctgcttttgcaaaccactcccaccccctatcgcatgcaccacaggggtggac 260

                                                                       
Query: 61  gggagcctcctgcctggctctagggagatggatcacagacacctgcactggggctgaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagcctcctgcctggctctagggagatggatcacagacacctgcactggggctgaaac 320

                                                                       
Query: 121 atcccctctcccccaacccccatggctcagttgatttttagctgagtgctgttttctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcccctctcccccaacccccatggctcagttgatttttagctgagtgctgttttctgca 380

                                                                       
Query: 181 tctttattctgctatggctgagttgaggttagtgagggactgagggaatgctcgttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttattctgctatggctgagttgaggttagtgagggactgagggaatgctcgttggaa 440

                                                                       
Query: 241 gtgctgtgggtaggacctggcaggtaggctctagggaacaaataaacaaaaagttcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctgtgggtaggacctggcaggtaggctctagggaacaaataaacaaaaagttcatgt 500

                                                            
Query: 301 gcacaatgagtggtgaccagaccactgcagctgtcatctcccttggtgt 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacaatgagtggtgaccagaccactgcagctgtcatctcccttggtgt 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_p22.g1 MSMg01no062_p22.g1 CHROMAT_FILE:
MSMg01no062_p22.g1 PHD_FILE: MSMg01no062_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:10 2005
         (323 letters)



>mm_chr12_113997402_113998124
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctttagatcagggtcttgggaacagccccaactttgaatagggtccaggttgacttc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 472 tgcctttagatcagggtcttgggaacagccccaactttgaacagggtccaggttgacttc 413

                                                                       
Query: 61  cctcctccttggcaggcagtaggcctcagttcagggatatggcctcagagtgtcctcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cctcctccttggcaggcagtaggcctcagttcagggatatggcctcagagtgtcctcagg 353

                                                                       
Query: 121 ggaagagtgccaacctcacagggtggggagtactcctgaggagcagggcctgacctcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggaagagtgccaacctcacagggtggggagtactcctgaggagcagggcctgacctcagt 293

                                                                       
Query: 181 gacccgtgtccagcctggtgggcaagaaagtgagcagaaaagggaccatccttcacttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gacccgtgtccagcctggtgggcaagaaagtgagcagaaaagggaccatccttcacttcc 233

                                                                       
Query: 241 tgtgggataatgccctaacttggctttggggttggtgtgggttatccaccagagaagaca 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 232 tgtgggataatgccctaacttggctttggggttgttgtgggttatccaccagagaagaca 173

                                  
Query: 301 gcgcagacatgggtctaagccaa 323
           |||||||||||||||||||||||
Sbjct: 172 gcgcagacatgggtctaagccaa 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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