BAC Information

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BAC

Clone NameMSMg01-064L04
Chromosome12 (Build37)
Map Location 66,163,409 - 66,163,728
singlet/doubletsinglet
Overlap genePrpf39, Fkbp3
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik
Downstream geneFancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L04.T7 (MSMg01no064_l04.b1)MSMg01-064L04.TJ (MSMg01no064_l04.g1)
ACCAG290098AG290099
length733730
length of high quality
(start - end)
324 (45 - 368)135 (174 - 308)
definitionCHROMAT_FILE: MSMg01no064_l04.b1 PHD_FILE: MSMg01no064_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:51 2005CHROMAT_FILE: MSMg01no064_l04.g1 PHD_FILE: MSMg01no064_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCAAACACCAAGCTCATTTTTGAAGTGGAATTAGTAGACATTGA
CTGAAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGT
GGCTAATTAGAGCTTGTAAGGGAAGAGTCAACTGGAAAATTTAGAGTTAA
AGCTTGTTTACTTGATCTCACATTTTGAGAAACATAATCCTGTTACTCCC
TTTAAGTCTCAGATATTTTCCTACAGCTATGTAAAGTATTCCAGAGAGCT
GCTTTCCTTTTACCTCGTAAACTAGAAGACTCAATAAAAGTGTCATGGAT
TGTCTTGACTGACTTATTCTATCGCGCGTTCTGTATTCTAATTAGGTAAA
AACTAGTGACTCTGTCCCAAGAGTTGAGCTGCTAATCAAGGTGGCTAGCT
TTGTCAAGGACATTTAAAATATAATACTTCATGGTGGAAATTAAAAGGCA
CAGGAACTTGAAACAAAACCAAAACAGTTAAAACATTCTGGTAGGAAGAT
AATAGATTTAGAGAAAAATTTACTTCAAGACAATGTTAATCTCTATTTTG
TGTACCTCCCCCAAATGAATTCATCAACAATTGCTGCATGAGTCTCCATT
TTTATTACAAAAATGATAAGTCTGATCAAAATGAAAGCTTGCTCATAAGT
TTTACATGAATATTCTAGATACAAACTCTCCTA
AATCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGAAAAACCAATGGGTG
AAAAGCACCCGAAAAAATGGTCAGCATCCTTAATCCTCCGGGAAATGGAG
ACTTTTTGGGATAGCACTGGAAATGGAAATGAAGAAAATACCTAATAAAA
ATATTTTAAAAAATTAAAAATAATAATAATAAATAAGTAAATAATGGGGT
ATATGGAGATATAATTCCTTTTTTGGTTTTTAAAGAAGGTATTATTTTAA
AGTTCCCCAATGGCCTGGCCTTGAAAATTATTAAGAAACCCCGGCCTAAA
AAAAAAAAAAGGGGGTTTTTTTTTTAACCCCCCCCCCCCGGAAATGGGTA
ATAATAAATTAATTACCAAACCCCCCAAAAGAAAAAAATAAAAAACCCGG
TCCTTTAATTGGTTTAACCCGAATTAAAACCCCCGGCATAAAAAAATAAC
GCCAGCCATGGCTAATTACCGGTTTAAGTGCCTAACCCAGAATTTGGGGC
CGAACCTTGGCAAATAACCGCTAAATTGGATACCCGGGAACTTTCCGGCC
AACACCTTTTCTCTGGCGGCCTTTCCCCCTGGAACCCGGAATCCCCCCAA
ATTCGCCTACCTTCCCCCCGGATCCGCCTTTCCCAACCTCCCGTTCCCCC
CCCTGGCCGCGCAATCCATCCTATATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l04.b1 MSMg01no064_l04.b1 CHROMAT_FILE:
MSMg01no064_l04.b1 PHD_FILE: MSMg01no064_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:51 2005
         (324 letters)



>mm_chr12_66163205_66163928
          Length = 724

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccaaacaccaagctcatttttgaagtggaattagtagacattgactgaaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattccaccaaacaccaagctcatttttgaagtggaattagtagacattgactgaaacc 465

                                                                       
Query: 65  agtacttcagatcggacatcagcaaacataaaaatgagctgtggctaattagagcttgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtacttcagatcggacatcagcaaacataaaaatgagctgtggctaattagagcttgta 405

                                                                       
Query: 125 agggaagagtcaactggaaaatttagagttaaagcttgtttacttgatctcacattttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agggaagagtcaactggaaaatttagagttaaagcttgtttacttgatctcacattttga 345

                                                                       
Query: 185 gaaacataatcctgttactccctttaagtctcagatattttcctacagctatgtaaagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaaacataatcctgttactccctttaagtctcagatattttcctacagctatgtaaagta 285

                                                                       
Query: 245 ttccagagagctgctttccttttacctcgtaaactagaagactcaataaaagtgtcatgg 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 ttccagagagctgctttccttttaccttgtaaactagaagactcaataaaagtgtcatgg 225

                               
Query: 305 attgtcttgactgacttatt 324
           ||||||||||||||||||||
Sbjct: 224 attgtcttgactgacttatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)