This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-064L04
Chromosome
12 (Build37)
Map Location
66,163,409 - 66,163,728
singlet/doublet
singlet
Overlap gene
Prpf39
,
Fkbp3
Upstream gene
EG623046
,
LOC623123
,
LOC217645
,
LOC217647
,
Gm527
,
Klhl28
,
A430041B07Rik
Downstream gene
Fancm
,
C79407
,
Wdr20b
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG623046
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:623046
MGI:3646964
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 2 Proteins
name
LOC623123
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:623123
definition
note
: DnaJ homolog subfamily B member 6 pseudogene
pseudo
: _no_value
name
LOC217645
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:217645
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC217647
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:217647
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins
pseudo
: _no_value
name
Gm527
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:217648
MGI:2685373
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Klhl28
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:66689
MGI:1913939
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
A430041B07Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:328108
MGI:2684313
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 140 ESTs, 4 Proteins
name
Prpf39
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:328110
MGI:104602
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fkbp3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:30795
MGI:1353460
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fancm
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:104806
MGI:2442306
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
C79407
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:217653
MGI:2145099
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Wdr20b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70948
MGI:1918198
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG623046
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149263261
GeneID:623046
MGI:3646964
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 2 Proteins
product
: predicted gene, EG623046
transcript_id
: XM_887483.3
name
Gm527
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71037370
GeneID:217648
MGI:2685373
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gene model 527, (NCBI)
transcript_id
: NM_001025605.1
name
Klhl28
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142373500
GeneID:66689
MGI:1913939
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: kelch-like 28 (Drosophila)
transcript_id
: NM_025707.2
name
A430041B07Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94392862
GeneID:328108
MGI:2684313
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 128 ESTs, 4 Proteins
product
: RIKEN cDNA A430041B07 gene, transcript variant 11
transcript_id
: XM_922989.2
name
A430041B07Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94392865
GeneID:328108
MGI:2684313
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 113 ESTs, 3 Proteins
product
: RIKEN cDNA A430041B07 gene, transcript variant 9
transcript_id
: XM_896986.2
name
Prpf39
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31342973
GeneID:328110
MGI:104602
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: PRP39 pre-mRNA processing factor 39 homolog (yeast)
transcript_id
: NM_177806.2
name
Fkbp3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142379927
GeneID:30795
MGI:1353460
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: FK506 binding protein 3
transcript_id
: NM_013902.3
name
Fancm
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:54112417
GeneID:104806
MGI:2442306
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Fanconi anemia, complementation group M
transcript_id
: NM_178912.3
name
C79407
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31044420
GeneID:217653
MGI:2145099
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: expressed sequence C79407
transcript_id
: NM_172578.2
name
Wdr20b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21735450
GeneID:70948
MGI:1918198
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: WD repeat domain 20b
transcript_id
: NM_027614.1
name
EG623046
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82942624
GeneID:623046
MGI:3646964
definition
codon_start
: 1
product
: similar to PKA phosphorylated calcium and CABYR-binding protein
protein_id
: XP_892576.1
name
Gm527
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71037371
GeneID:217648
MGI:2685373
definition
codon_start
: 1
product
: hypothetical protein LOC217648
protein_id
: NP_001020776.1
name
Klhl28
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21313368
CCDS:CCDS25938.1
GeneID:66689
MGI:1913939
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: BTB (POZ) domain containing 5
protein_id
: NP_079983.1
name
A430041B07Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94392863
GeneID:328108
MGI:2684313
definition
codon_start
: 1
product
: hypothetical protein LOC328108 isoform 11
protein_id
: XP_928082.2
name
A430041B07Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82942529
GeneID:328108
MGI:2684313
definition
codon_start
: 1
product
: hypothetical protein LOC328108 isoform 9
protein_id
: XP_902079.1
name
Prpf39
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29366826
CCDS:CCDS25939.1
GeneID:328110
MGI:104602
definition
GO_function
: GO:0005488 - binding [Evidence IEA]
codon_start
: 1
note
: v-src suppressed transcript 1
product
: PRP39 pre-mRNA processing factor 39 homolog
protein_id
: NP_808474.1
name
Fkbp3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7305061
CCDS:CCDS25940.1
GeneID:30795
MGI:1353460
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0016853 - isomerase activity [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO_process
: GO:0006457 - protein folding [Evidence IEA]
codon_start
: 1
note
: FK506-binding protein 3 (25kD); FK506 binding protein 3 (25kD)
product
: FK506 binding protein 3
protein_id
: NP_038930.1
name
Fancm
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:54112418
CCDS:CCDS25941.1
GeneID:104806
MGI:2442306
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
product
: Fanconi anemia, complementation group M
protein_id
: NP_849243.2
name
C79407
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31044421
CCDS:CCDS25942.1
GeneID:217653
MGI:2145099
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]
GO_process
: GO:0045449 - regulation of transcription [Evidence IEA]
codon_start
: 1
product
: expressed sequence C79407
protein_id
: NP_766166.2
name
Wdr20b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21735451
CCDS:CCDS25943.1
GeneID:70948
MGI:1918198
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: WD repeat domain 20-like
protein_id
: NP_081890.1
name
LOC217645
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:217645
definition
number
: 1
pseudo
: _no_value
name
LOC217645
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:217645
definition
number
: 2
pseudo
: _no_value
name
LOC217647
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:217647
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-388A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-505D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-403D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337J21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407A16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-063A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330D24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389J09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-274H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-212M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336I12
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-060D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371M03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072G20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-547L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-364A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537L15
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-104N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-399C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489K16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-125A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121P14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-349P06
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-290P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-102C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-518B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-170A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-513G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-330N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-295C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-195H14
singlet/doublet
singlet
plural/unique
unique
clone name
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doublet
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B6Ng01-196E01
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B6Ng01-024D04
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