BAC Information

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BAC

Clone NameMSMg01-064P06
Chromosome12 (Build37)
Map Location 35,522,075 - 35,522,385
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P06.T7 (MSMg01no064_p06.b1)MSMg01-064P06.TJ (MSMg01no064_p06.g1)
ACCAG290278AG290279
length738859
length of high quality
(start - end)
316 (45 - 360)---
definitionCHROMAT_FILE: MSMg01no064_p06.b1 PHD_FILE: MSMg01no064_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:18 2005CHROMAT_FILE: MSMg01no064_p06.g1 PHD_FILE: MSMg01no064_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAATGCTGGAACTTAGCTCAGGAAGATCTGACAGTGTCTCCACA
CAGCAAAGTGGTCCTGTAAAAAAAACGTCTCACTAGCGGGGTGGTCTAGA
AGTCAATTAACCTCTCTGAGTTTCACTTGCTTAAACATGAATTACTTAAC
TTACCAGGTCATGTTGAGGATTAGCGGAAATAATAGGAAGTAACACGAAG
GGGAACATACTCAAAAGATTGGCTATTATTAGCATTAGTATACAAATTGT
ACTTTACTTCAAGCCAGAGCCATTCTAGGAGCAAAGAGTGACACAGGGCA
CCTCCTGCTGTTTAGCACACCCCTCGCCCCACAGAGAGTAATCATCAACC
TCTGCTACAGTGACAAAAGCATCTAATTACTCAAGCTTTTTTCCTTGCTG
TCTTTCTTTTAGAAGACAAATGTGTATTCTAAAGGAAAATACTGCGTTAT
CCTCTGCTTGTGAATACACCACGCTCACTTTAATCTTTCATTGATGTTAC
TTGCATTGTAAAAAATCACTTGAGTGTAAATGGACAGAAAAAAAAATTTA
AGTAAGCTAGGAACAGCTATCACATTGCAGAAATTTAAAGAAAACTGTGT
GGTCTATTTCCCTCATGTGGAGAACTCTTCCAGGAAGAGCTATTTTTCTT
CTGTCACAGATCACTTTAACATTTTCAATAGAGCCTCC
NCCTCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAGCAGGCCAAAG
CAGAGACTGGTAGAGAGATGCTCACTGTGGTGGAGGTTGGGGTATAAGGG
AAGAAAGGATGAGCCCCGCAGCCCTGATGAATCCCTATAGACCACACCGG
ACCCTCACCAAATCCCTGCTACTCCTGCTTACCTACCGTCTTTCCCCTCA
TGCCCTTGGCTCCCCCAACTACTATACCTTTGCCCTCGCCCACTTCCTTT
CCCCTCTTACCCTCCTTCCTCTCTTCACACACCTCCTTCTTCCCTCCACT
CCGTTCCCTCCCTCCTCCCCTTCCTTCTTTTTCTTTTCCCCCCCCCCCCC
CCCCCCCATTTTCCTCCCTTTCCCTTCCATTCCCCCTTCCCCCCCCCCCC
CCCCCAAACAACAAACACATCTTCCCCCATTCTGCCCCCTTTCCCCCCCT
CCCTTTCCCTCCATCATCCCCCCCTCCTTTCCCTTCTCTTCTTCCCTCTC
CCCCCCTTTCTCCTTTCTCCCCTCTCCTCCCTTTCCTTTCCCCCTCCCCC
TTCTCTCTCCCCTCCCTTTCCTTTTCCTTTCCCCTCTTCTTTCTCCCCCT
CTCCTCCCCCTTATTTCCCCTTTTCTCCGCTATTCCCCCCACCCCTCTCC
CTTTTACCCCTATTTCCCCCCTTTTCCCCCTCCTCCCTTCCCCTCCCCCT
TCCCCCCTTCCTTTCCCCTTTCCTTTCCCCCCCCTTTTATCCCCCCTTTT
TCCTTTCCCTTCCCCTTCCCCCTTCCCTTTCCCTCCCCCTCCCTCCCTTT
TTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p06.b1 MSMg01no064_p06.b1 CHROMAT_FILE:
MSMg01no064_p06.b1 PHD_FILE: MSMg01no064_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:18 2005
         (316 letters)



>mm_chr12_35521870_35522585
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaatgctggaacttagctcaggaagatctgacagtgtctccacacagcaaag 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttaatgctggaacttacctcaggaagatctgacagtgtctccacacagcaaag 265

                                                                       
Query: 65  tggtcctgtaaaaaaaacgtctcactagcggggtggtctagaagtcaattaacctctctg 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggtcctgtaaaaaaa-cgtctcactagcggggtggtctagaagtcaattaacctctctg 324

                                                                       
Query: 125 agtttcacttgcttaaacatgaattacttaacttaccaggtcatgttgaggattagcgga 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 agtttcacttgcttaaacatgaattatttaacttaccaggtcatgttgaggattagcgga 384

                                                                       
Query: 185 aataataggaagtaacacgaaggggaacatactcaaaagattggctattattagcattag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataataggaagtaacacgaaggggaacatactcaaaagattggctattattagcattag 444

                                                                       
Query: 245 tatacaaattgtactttacttcaagccagagccattctaggagcaaagagtgacacaggg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 tatacaaattgtactttacttcaagccagagccattctaagagcaaagagtgacacaggg 504

                       
Query: 305 cacctcctgctg 316
           ||||||||||||
Sbjct: 505 cacctcctgctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)