BAC Information

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BAC

Clone NameMSMg01-065J09
Chromosome12 (Build37)
Map Location 110,984,708 - 110,984,979
singlet/doubletsinglet
Overlap geneLOC100040724
Upstream geneYy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715
Downstream geneLOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065J09.T7 (MSMg01no065_j09.b1)MSMg01-065J09.TJ (MSMg01no065_j09.g1)
ACCAG290760AG290761
length774761
length of high quality
(start - end)
277 (106 - 382)242 (132 - 373)
definitionCHROMAT_FILE: MSMg01no065_j09.b1 PHD_FILE: MSMg01no065_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:08 2005CHROMAT_FILE: MSMg01no065_j09.g1 PHD_FILE: MSMg01no065_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTNNTTTTTNNNNTT
TTTCTGTCTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGA
GAACCGCGGAATTCTCTGACCTCTCACAACCCCCACCCCAGAGGCTTTCC
TCCTGTCTGCCTGAGGGGCAGACATTTTCACTTGACTCACTGGATGAGAA
AAGTCCTTTATTTGTCTTTTCTTCTTCTCAAACAATAGATAAATCTAGTA
ATTTTGCTTTTAATAAAAGTCTGCACCGAGCAGGAGGGACCATCCTCTTA
GGGTCTCCAATGAATTTGGAGTGTGCGTGTCGGTTGTTGCTTGGCACCCC
AGCTGACATTCCATCTTGCACATAATACTTCCTTGGTGACTGAGGTACCT
GGGGCTTTCCCCATCGGTGATGCAGAGACTAGGGGTAGCCTATCTGTGGA
TGCCTTGTTGTGACTGCGTTTACTCCGCATCTCTTATATGGAGAGATCTT
CAGCCTTCTTGCACGCGTCTTAATATATTTCCAAAGAAGTGTCATTAACA
GCAATTTCCATCTCCCAATTGTCCCCATTTGCTTAAGAACATGCCATTAA
ATACTTTTCCTGACAGTTATCTCCAGTCTGTTGTTCGAATTTACTTCGTT
GTTGCCTCTGGTTTTGAAGCCTCTTTTAACGTTTTTCGCACTTGCATCAA
TTGGATTAATAATTATATACCTAACCATATTTATATTTTTTCGTTTCTCT
TTCTTTATTATTTAACACCAATTT
TTTTTTTTTTTTTNNGTTTTTTTTTTTAGNCGNCGGTTTTCNNNAATCCT
TCNNACTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACTAGGACCCTCCCT
ACAGCTTTTGAAGCTCAGATGTCCAGAAAGTGGGACCTCTTTAACGTTTC
AGACCTAAGAATCTACCTCCAGCCCAGAAAGAGGGACTCCTCTGATGCTC
CAGACCTAAGACTCTACCTCCAGCCTTTGATGAAGCTCAGATGTCCAGAA
AGAGGGACCTCTCTGATGTTCCAGATCTAGGACCCTCCCTCCAGCCATTG
ATGAAGCTCAGATGTCTAGAAAGAGAGTCCTCTATGATGTTCCAGTTCTA
AGAATCTACCTCCAGCCTTTGATGAAGCACAGATGTCCAGAAAGATGGCC
CTTCTCTGATGCTCCATATCTAGGACCCCCCCTCTAGTCTTTGATGAAGT
ACAGATGTTCAGACTGATGGTCCTCTCTGATGTTCCAGATTTATGACCCT
CTCTCTAGCCTGTGATGAAGTTCAAATGCCCTGAATGAGGCACCTCCCTG
AATGCTCCAACCTTAGACTTCTACTCCGGGCTTTGATGAATCTTAATAGT
CCAGAAAAGTAGGACCCCCTCCGATGTTCCGAACATAGGACCCCTTTCTC
TTAGAATTTGATTAAGTTTCTTAATGCCCAGATTGTAGGTTCCCTCCCTG
ATTGTTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_j09.b1 MSMg01no065_j09.b1 CHROMAT_FILE:
MSMg01no065_j09.b1 PHD_FILE: MSMg01no065_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:08 2005
         (277 letters)



>mm_chr12_110984505_110985182
          Length = 678

 Score =  485 bits (251), Expect = e-142
 Identities = 267/273 (97%), Gaps = 3/273 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctgacctctcacaa--cccccaccccagaggctttcctcctgtctgcctgagg 61
           |||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattctctgacctctga-aagtcccccaccccagaggctttcctcctgtctgcctgagg 417

                                                                       
Query: 62  ggcagacattttcacttgactcactggatgagaaaagtcctttatttgtcttttcttctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggcagacattttcacttgactcactggatgagaaaagtcctttatttgtcttttcttctt 357

                                                                       
Query: 122 ctcaaacaatagataaatctagtaattttgcttttaataaaagtctgcaccgagcaggag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctcaaacaatagataaatctagtaattttgcttttaataaaagtctgcaccgagcaggag 297

                                                                       
Query: 182 ggaccatcctcttagggtctccaatgaatttggagtgtgcgtgtcggttgttgcttggca 241
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 296 ggaccatcctcttagggtctccaatgaatttggagtgtgcgtgtcggtggttgcttggca 237

                                            
Query: 242 ccccagctgacattccatcttgcacataatact 274
           |||||||||||||||||||||| ||||||||||
Sbjct: 236 ccccagctgacattccatcttgtacataatact 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space:   179292
Effective search space used:   179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)