BAC Information

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BAC

Clone NameMSMg01-067L09
Chromosome12 (Build37)
Map Location 41,452,082 - 41,571,255
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L09.T7 (MSMg01no067_l09.b1)MSMg01-067L09.TJ (MSMg01no067_l09.g1)
ACCAG292380AG292381
length713701
length of high quality
(start - end)
226 (80 - 305)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no067_l09.b1 PHD_FILE: MSMg01no067_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005CHROMAT_FILE: MSMg01no067_l09.g1 PHD_FILE: MSMg01no067_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,571,030 - 41,571,255)(41,452,082 - 41,452,367)
sequence
ATGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCGCATTTACCTAAAAAAGTGACTTATAGCTGAGACACCTT
ACGGGGCAGGGGCCTGGGCCTAGGCCCAGGCTCAGTCCTACGGGTCCCAT
TCTCCAGGTGGCTGGACCGCGCAGCCAAGGGCTTGGGGGGCAGAGCAGGT
GGCTCAGAGGTGACAGGGATGGAGAGGCTGTGAGGTAGCGGGACAGGGCG
CCGCAGAGTCCGCTCGTAGACACTGTAGGGGGGTGGGGTTTTGCTCTCCT
TGCGTACAGGTTCCTCCGACTCTTTGAATCTGGGCACGGGCACTGGCACG
GGCACCGGATTTTTTTTTTTCACCCCCCGCCCCTTGTCTTGGTTTTCATA
GTCTGAGGTTTCCGACGCCGCCATATTGAATAAAAGAGAAAATCCCGCTG
CTGTGGCTGCCGGATAAGACTGTTGTATTTGATCTCCGTCCTGGTTAGTT
GTATTCCCCTGCATATGTCTTGTATTGTCTGCATTCCGCCTCTTTTCCAT
TCCTCGTTGTTCTCTTGCGATTTACTATTTCGTTGTCTTTTACTGGATCC
CCCTCTTTTTCTTTTATTGTCTTTTTTCTTTATCTTCTTTCACTTTTGCG
GCCCCCCTCTTCCCTTCTTTTCTATCTATATACCTGTTTGGTTCTCCGGA
GCACCTTTTATCG
ATTCAATGTAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATGGATTTTCCTTAAAAGC
CAAATTCTGTTTATAATGCTGTTTGCAATGCTTCCAGTTCATAAATGCTA
CAATAAAGAATTAATGGTAGAATTATGCTTAATAATTCTTCTGAGGTCTC
ACCTCCCATTCTTAATATTTTTTTCACAGTGTGAAGAAAACACAAACCTT
CAGGATACTACCCGCTACCTCAAGCTCCCATTTTCCAAGGTCATCTTCCT
TGGGAACAATAATCAAACCATGAAAGCCACAAAGGAATCCTTTTGGATAA
CATCATTTCTCTGTTTTTCAAAACCCACTCCCACTGGTAATGTACGATAC
AAGCCCTCCGACCTAAGGTCACGTGAAAAATGTATGTATTTTGGTAAGCA
TATTCGGCAAGGATTAAAGTATTTAAGAATCTTGCACTAGAAATGATCTG
AATTCTTTTGTGTAGGATTTCTAATCAAAAGAACAATTAGCGACTCCCTT
TGAGCAACTTATTGACTTAAGAATTAGCCCAGCGCTTAAACCCAAATGTC
AACTAACTCTTCGAATATACTATTATAAACCAGCTGCTTTTATTTCCTTA
CAAGATGATTAGCGTTTCCACCTGAAATCCCTCACCCTATATTTCCATAG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l09.b1 MSMg01no067_l09.b1 CHROMAT_FILE:
MSMg01no067_l09.b1 PHD_FILE: MSMg01no067_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:53 2005
         (226 letters)



>mm_chr12_41570830_41571455
          Length = 626

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacttatagctgagacaccttacggggcaggggcctgggcctaggcccaggctcagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 gacttatagctgagacaccttacggggcaggggcctgggcctagggccaggctcagtcct 367

                                                                       
Query: 61  acgggtcccattctccaggtggctggaccgcgcagccaagggcttggggggcagagcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acgggtcccattctccaggtggctggaccgcgcagccaagggcttggggggcagagcagg 307

                                                                       
Query: 121 tggctcagaggtgacagggatggagaggctgtgaggtagcgggacagggcgccgcagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggctcagaggtgacagggatggagaggctgtgaggtagcgggacagggcgccgcagagt 247

                                                         
Query: 181 ccgctcgtagacactgtaggggggtggggttttgctctccttgcgt 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccgctcgtagacactgtaggggggtggggttttgctctccttgcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_l09.g1 MSMg01no067_l09.g1 CHROMAT_FILE:
MSMg01no067_l09.g1 PHD_FILE: MSMg01no067_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:53 2005
         (286 letters)



>mm_chr12_41451882_41452567
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatggattttccttaaaagccaaattctgtttataatgctgtttgcaatgcttccag 60
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 ttttatggactttccttaaaagccaaattctgtttataatgctgtttggaatgtttccag 260

                                                                       
Query: 61  ttcataaatgctacaataaagaattaatggtagaattatgcttaataattcttctgaggt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcataaatgctacaagaaagaattaatggtagaattatgcttaataattcttctgaggt 320

                                                                       
Query: 121 ctcacctcccattcttaatatttttttcacagtgtgaagaaaacacaaaccttcaggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcacctcccattcttaatatttttttcacagtgtgaagaaaacacaaaccttcaggata 380

                                                                       
Query: 181 ctacccgctacctcaagctcccattttccaaggtcatcttccttgggaacaataatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacccgctacctcaagctcccattttccaaggtcatcttccttgggaacaataatcaaa 440

                                                         
Query: 241 ccatgaaagccacaaaggaatccttttggataacatcatttctctg 286
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgaaggccacaaaggaatccttttggataacatcatttctctg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)