BAC Information

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BAC

Clone NameMSMg01-068C14
Chromosome12 (Build37)
Map Location 114,253,968 - 114,408,377
singlet/doubletdoublet
Overlap genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Downstream geneLOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C14.T7 (MSMg01no068_c14.b1)MSMg01-068C14.TJ (MSMg01no068_c14.g1)
ACCAG292720AG292721
length695689
length of high quality
(start - end)		462 (64 - 525)407 (57 - 463)
definitionCHROMAT_FILE: MSMg01no068_c14.b1 PHD_FILE: MSMg01no068_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:30 2005CHROMAT_FILE: MSMg01no068_c14.g1 PHD_FILE: MSMg01no068_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,408,019 - 114,408,377)(114,253,968 - 114,254,374)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATG
GATTTCCGCAAGGTACTGGGGGAGTGGGGCATATTTTTTGAGACCAAGCT
GACTTGAGCTCAGACACTCACATGCCTCTACCTCCTGAGTTCTGGGATTG
GAGGTGTGTGCCGTTACACTTGGTTATTTCAGTTTTGAGGGAAGCTCACA
TAGTGATTGATATACAGCCCATCAGATACCTCCTGAGCAGCTTGAGAGAG
CTGAGGGTTTCAACACTGGGCACACACCCCTTTGATTATTTCCTTAACAA
ACTGGGTTGACTGTCACTGCCGTGATAAGAAAGCAAATTCCAGGCAAAAG
CCAAAGCAAATCAGGATGCCCAGCTGATCCCACCTGATCCCATAAAAGCT
TGAAAGTGTAGCCCCACGATCCTCTCATCACACAAGCACAGCTGTTTAAG
AACTAAACCAAGGCTTTTTGGATTGGTTTGCCCACACATACACACCCATT
TATGTGTCTTTTACATTTTTTTTCGAGACAAGGTCTTGTGCAGCCCAAAT
TGGCTTCAACCTGCTCTGTATGCCATGGACAATCTTCTACTTCTGATTTT
CTTGCCTCTACCTTCCAAGGGTTGGTATTACAGGCTCCGGCCATTACATG
CAGTTTATCAGATGCTGGGTACTGAACTCATACTCTCCCATATGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTTTAGCAGTCTCTGAGTTCCCTTAATGAGAGCCAAGGGTCCCC
ATGCCCCCCACCCCATACACCAGTCAGCCTTTCTCTTTCTCCCTCCCTCT
TCTGTTCCCCCTTCCTTCTTTTTCAGAAACACTGAGGCTGTTTGAACTCC
TATGCTCTTGTGATCCACATCCCCAACACACACTTGAACTTCTTTTAGAG
TTAGAACCGCAGATACAGGTAGCACACTCACCTAAGACTGGAGCCTAAAC
CTAGTATGGAAAGGGAGAGAGGCCATTTCCTTTAAAGGTGGACGATTTTT
TTTTTCTTTTGAGACAGGGTTTTGCTTTGTAGTCATGAATGGCCTTGAAC
TTGTTTTTGTAACCCAGGGTGGCCTTGAGCTCTCAGTCCTCCTGCCTCTG
CCTCCTGTGTACAGGGATTATAGGCATGCGCACCGCGCCTGCTGTGTTCT
GTGTTCTTGAAGATCCTTTTTCCACAGGAGAAGGTAGTCCTCAGGTAACG
CTGGTGGAGGACAGGCTTACCCAGACAGGAAGACGTGATAGGTGTGTACA
CCACCAGGTGTTGGCGCGCTCTGGATGTTGGGCTGAACTGACACTTTCTC
TGTAGGTGTGATGACCTTTGCCCAGTGGATCATTATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c14.b1 MSMg01no068_c14.b1 CHROMAT_FILE:
MSMg01no068_c14.b1 PHD_FILE: MSMg01no068_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:30 2005
         (462 letters)



>mm_chr12_114407516_114408377
          Length = 862

 Score =  679 bits (351), Expect = 0.0
 Identities = 357/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 104 cacttggttatttcagttttgagggaagctcacatagtgattgatatacagcccatcaga 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 cacttggttatttcagttttgagggaagctcacatagtgattgatatacagcccatcaga 803

                                                                       
Query: 164 tacctcctgagcagcttgagagagctgagggtttcaacactgggcacacacccctttgat 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tacctcctgagcagcttgagagagctgagggtttcaacactgggcacacacccctttgat 743

                                                                       
Query: 224 tatttccttaacaaactgggttgactgtcactgccgtgataagaaagcaaattccaggca 283
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 742 tatttccttaacaaactgggttgacagccactgccgtgataagaaagcaaattccaggca 683

                                                                       
Query: 284 aaagccaaagcaaatcaggatgcccagctgatcccacctgatcccataaaagcttgaaag 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaagccaaagcaaatcaggatgcccagctgatcccacctgatcccataaaagcttgaaag 623

                                                                       
Query: 344 tgtagccccacgatcctctcatcacacaagcacagctgtttaagaactaaaccaaggctt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtagccccacgatcctctcatcacacaagcacagctgtttaagaactaaaccaaggctt 563

                                                                      
Query: 404 tttggattggtttgcccacacatacacacccatttatgtgtcttttacattttttttcg 462
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttggattggtttgcccacacatacacacccatttatgtgtcttttacattttttttcg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_c14.g1 MSMg01no068_c14.g1 CHROMAT_FILE:
MSMg01no068_c14.g1 PHD_FILE: MSMg01no068_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:30 2005
         (407 letters)



>mm_chr12_114253768_114254574
          Length = 807

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttagcagtctctgagttcccttaatgagagccaagggtccccatgccccccaccccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttagcagtctctgagttcccttaatgagagccaagggtccccatgccccccaccccat 260

                                                                       
Query: 61  acaccagtcagcctttctctttctccctccctcttctgttcccccttccttctttttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccagtcagcctttctctttctccctccctcttctgttcccccttccttctttttcag 320

                                                                       
Query: 121 aaacactgaggctgtttgaactcctatgctcttgtgatccacatccccaacacacacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacactgaggctgtttgaactcctatgctcttgtgatccacatccccaacacacacttg 380

                                                                       
Query: 181 aacttcttttagagttagaaccgcagatacaggtagcacactcacctaagactggagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttcttttagagttagaaccgcagatacaggtagcacactcacctaagactggagcct 440

                                                                       
Query: 241 aaacctagtatggaaagggagagaggccatttcctttaaaggtggacgattttttttttc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacctagtaaggaaagggagagaggccatttcctttaaaggtggacgattttttttttc 500

                                                                       
Query: 301 ttttgagacagggttttgctttgtagtcatgaatggccttgaacttgtttttgtaaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgagacagggttttgctttgtagtcatgaatggccttgaacttgtttttgtaaccca 560

                                                          
Query: 361 gggtggccttgagctctcagtcctcctgcctctgcctcctgtgtaca 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtggccttgagctctcagtcctcctgcctctgcctcctgtgtaca 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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