BAC Information

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BAC

Clone NameMSMg01-068J12
Chromosome12 (Build37)
Map Location 11,791,669 - 11,791,955
singlet/doubletsinglet
Overlap geneLOC628327
Upstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390
Downstream geneLOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J12.T7 (MSMg01no068_j12.b1)MSMg01-068J12.TJ (MSMg01no068_j12.g1)
ACCAG293052AG293053
length733720
length of high quality
(start - end)
199 (48 - 246)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no068_j12.b1 PHD_FILE: MSMg01no068_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:04 2005CHROMAT_FILE: MSMg01no068_j12.g1 PHD_FILE: MSMg01no068_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACTTTCTTGAGTTCTCCCTATATATATATATATATATA
TATATATATATATATATATATTGGATATTACTTCCATATATTATTTAGGA
TTGGTAAAGATCCTTTCCCAATCTGTTGGTAGCCTTTTTGTCTTATCGAA
GGTGCCTTTTGTCTTACAGAAGCTTTGTAATTTTATGAGTTCCCATTTGT
CGATTCTCGATCTTACAGCAGACGTCTTTGCTGTTCTACTTAGGATTTTT
TCCCTGAGACCATTTTGTGTTTTCCTCCCCCCCCCCCCCCACCGCGGAAA
GTATCTTTGTATTTGGTCCTACGTGAAGTAACAAAAAAAAAATTACTTGT
GGTGGTGGGTGCTATTTTATATTAATGTATCATCTCTTATTTATGCACTT
GATGACTCCCAGTTCGTGCCTCGTTCTTTTTGCTAGAAATTGCTGCCTTT
TAACGCAAGACTGTTTTTTATTTACGTTGCTTACTTTTATGTTTTCCAGT
ATTATGTGTCGTTTTCCTTTTGTAGCTACTACCTCCATTCTTGCGTCTTC
TTCTTACTTTTGCGAAGACATCTTATGATTATCCATTTTTTTTCCTTCCT
TTTTTTTATTTTATATTTTCTCTCTCTTCGTCT
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCCGAATCAATGTCCTTCCTTATCAGTGACATTA
AAAAGTATGTCTATGTGTTTCCTGGCTCCAAGTAAAGATAAAAGATAAAA
ATTCATTTTTCCCCAACAAGCATAAGCAGGTAACAAATTGGAGTACTCAG
AATTAGTCCAAAAAATGCATAAGTAGAAACACAAGCCAACAAGAAATAAA
AAGAACAAGATGCCTGTAAGAAAATTCTAGAAGAAGGCAAAATTTTAATT
AAACTGTTGTCATAAACTGCAGCATGGTAAGAATCCTAGGGAAACCTGTT
ACTAATGGATAGATATTTATGTCATGCGCACCACCTAATTATTTGTATAT
AATAATGAAATACTGCTGCAATGCAGAGCATAATGAAGAAGATAAGCTTG
TGAAATTTAGAATGCTGAGAAGAGCCCAGTGAAGATAAAACATATCTTGC
TGATCTCAATGGCCAAAAGTTACAGGAGGAAAAATAGAGATAAGAATTTG
CCTACCTCTGCATGTATCAGAGAACATCTTTATTTTAACTTGGGTGTCTA
AATATAAGTAAATTTTAAATTACCAATATTTATTATGACTCTTGCAATTC
ATAAATATGCTTTTATTCCAGAATCTTGAAAATAATTTGGGTCTAGAAAA
ACTGTTAATGGTATAAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j12.g1 MSMg01no068_j12.g1 CHROMAT_FILE:
MSMg01no068_j12.g1 PHD_FILE: MSMg01no068_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:04 2005
         (289 letters)



>mm_chr12_11791464_11792155
          Length = 692

 Score =  464 bits (240), Expect = e-135
 Identities = 275/288 (95%), Gaps = 5/288 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   cttccttatcagtgacattaaaaagtatgtctatgtgtttcctggct-ccaagtaaagat 64
           |||||||||||||||||||||||||||||||||  ||| |||||| |  |||||||||||
Sbjct: 492 cttccttatcagtgacattaaaaagtatgtctaaatgtatcctgg-taacaagtaaagat 434

                                                                       
Query: 65  aaaagataaaaattcatttttccccaacaagcataagcaggtaacaaattggagtactca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 433 aaaagataaaaattcatttttccccaacaagcataagcaggtaacaaattggagtacaca 374

                                                                       
Query: 125 gaattagtccaaaaa---atgcataagtagaaacacaagccaacaagaaataaaaagaac 181
           |||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 gaattagtccaaaaaaatatgcataagtagaaacccaagccaacaagaaataaaaagaac 314

                                                                       
Query: 182 aagatgcctgtaagaaaattctagaagaaggcaaaattttaattaaactgttgtcataaa 241
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 313 aagatgcctgtaagaaaattctagaagaaggcaacattttaattaaactgttgtcataaa 254

                                                           
Query: 242 ctgcagcatggtaagaatcctagggaaacctgttactaatggatagat 289
           |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgctgcatggtaagaatcctagggaaacctgttactaatggatagat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 692
Length adjustment: 9
Effective length of query: 280
Effective length of database: 683
Effective search space:   191240
Effective search space used:   191240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)