BAC Information

Click to search

BAC

Clone NameMSMg01-068J24
Chromosome12 (Build37)
Map Location 27,024,442 - 27,210,420
singlet/doubletdoublet
Overlap geneRnf144, Rsad2, Tyki, LOC668731
Upstream geneLOC100042973, LOC100042974, LOC668726
Downstream gene1700020D12Rik, Sox11
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J24.T7 (MSMg01no068_j24.b1)MSMg01-068J24.TJ (MSMg01no068_j24.g1)
ACCAG293075AG293076
length737753
length of high quality
(start - end)
285 (41 - 325)160 (129 - 288)
definitionCHROMAT_FILE: MSMg01no068_j24.b1 PHD_FILE: MSMg01no068_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:06 2005CHROMAT_FILE: MSMg01no068_j24.g1 PHD_FILE: MSMg01no068_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,210,140 - 27,210,420)(27,024,442 - 27,024,599)
sequence
CATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACACAGAAGCCACTAGTTGATACCTCTTGTCAGGAAAGAACTTTGTACCA
GACAATCCAAACAAAATAAAAGCCCTCTGCACCACCAGGTCTAGCTTCCC
ACCCCCTCCATGCTGTGAGCACCTGGCGTTCTACTGGGCACACTTATCCA
TCAGCACACAAAGGGTGGGATTGATTCTCAAGAAGCAGTTGTCTGGTGGC
TTCACATACAGCACCCCTGAAATTGACTCTTGCTGCCACCCCTAGTTCAG
TGGCCACTGTCAGCAGTGGTTTGAGTTTTTATCAGACCCCCTAGTTTGCT
AAGAGGGAGCCAAGTTTTGATGNTTCCCATGGCAANACCCGCTTCCAGTA
CCTGCCATGACAGGGGCTCTCCCATCATGAACAAAACACCAAAAAGTGAG
GGGGAGGTTTTTTCTGGCTGCTGGCCAGCCTGGCATCACCTCACATGGTA
TCAGGTTCTGGCTGGGCATACTTAGGGTGGTTAGATTGACTCTTAATTTC
TCCTTCCTCATGCACTGATCGAAAATATTATATCAGATTCTAATGCCCTG
GCGACTGATATCTAATTCTGATTAGGCGCACTTAAGATGCATTCTGATAA
CTTCTATTTTCTTCCCCCTCTTTTTCTTCCCTCTGATGTTGTATCTATGC
AATGTTCCTGCTTATTGCCTTGTTCTGCTATTCCTAT
ATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCTGTTACTTCCATCCCCTGGATATAGTGGGATAGGGTTGAG
GAGGGGACAGCAAGTGATTGTGGCTCGGAGACAACCTCGGAAGAGGTTTA
TCCAGGGCCCTTGCCTCAGGTCTGAGGGTGGCGATTTTACATTCTGGTGT
TAATCCTCAAGACTGAAATTGACCACACCCACCCATCCTTTAACCCCTCT
GAGATGCAATTGATAGCAGTGTGTTGGTGAAGTTTATCAAGCACGGAAGG
TTGGCTAAGATACTTCTTGCTTTCGACTCTTCTCCAGTTTACAGTGTAGA
AACATCTGAGGGAAATGTCTTATATGACCCTCACTCTCTTACGCCCTTCT
TATTCTCATAAGATAAGCAGCTTCCCAGTGGACTACCAATAATACCTTCA
CCCCTGTATGCTTCTTAAGTATCCTCATTTTCTAGAATGTTCATTTCTGG
ACAGTGAGGGTCTTTGACAGTCAGGTTCCCTTTACTGAAATCAAATATGT
ACAACAGTCCCTTCTTTGATGTTCATTACCCAACCCTCCACGAACATTTT
CGCCTTAATTTCCACAAGCCCTATGACTGATTTCTCCTGGCTCTTCTTCT
GCATTGCCTGCATGCACACCATCTATGCGTTATTACTCATTGCTGGGTTG
TTGGACCAATCACTGATGTCCTGACTCTCCTTAAAATTACCTGGTTTCAG
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j24.b1 MSMg01no068_j24.b1 CHROMAT_FILE:
MSMg01no068_j24.b1 PHD_FILE: MSMg01no068_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:06 2005
         (285 letters)



>mm_chr12_27209936_27210620
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacagaagccactagttgatacctcttgtcaggaaagaactttgtaccagaca 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaattcacacagaagccacaagttgatacctcttgtcaggaaagaactttgtaccagaca 426

                                                                       
Query: 65  atccaaacaaaataaaagccctctgcaccaccaggtctagcttcccaccccctccatgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atccaaacaaaataaaagccctctgcaccaccaggtctagcttcccaccccctccatgct 366

                                                                       
Query: 125 gtgagcacctggcgttctactgggcacacttatccatcagcacacaaagggtgggattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgagcacctggcgttctactgggcacacttatccatcagcacacaaagggtgggattga 306

                                                                       
Query: 185 ttctcaagaagcagttgtctggtggcttcacatacagcacccctgaaattgactcttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttctcaagaagcagttgtctggtggcttcacatacagcacccctgaaattgactcttgct 246

                                                    
Query: 245 gccacccctagttcagtggccactgtcagcagtggtttgag 285
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gccacccctagttcagtggccactgtcagcagtggtttgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no068_j24.g1 MSMg01no068_j24.g1 CHROMAT_FILE:
MSMg01no068_j24.g1 PHD_FILE: MSMg01no068_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:07 2005
         (160 letters)



>mm_chr12_27024242_27024801
          Length = 560

 Score =  298 bits (154), Expect = 1e-85
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaacctcggaagaggtttatccagggcccttgcctcaggtctgagggtggcgatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaacctcggaagaggtttatccagggcccttgcctcaggtctgagggtggcgatttt 260

                                                                       
Query: 61  acattctggtgttaatcctcaagactgaaattgaccacacccacccatcctttaacccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattctggtgttaatcctcaagactgaaattgaccacacccacccatcctttaacccct 320

                                                 
Query: 121 ctgagatgcaattgatagcagtgtgttggtgaagttta 158
           |||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ctgagatgcaattgatagtagtgtgttggtgaagttta 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)