Query= MSMg01no069_k02.b1 MSMg01no069_k02.b1 CHROMAT_FILE:
MSMg01no069_k02.b1 PHD_FILE: MSMg01no069_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:26 2005
(467 letters)
>mm_chr12_63453039_63453905
Length = 867
Score = 717 bits (371), Expect = 0.0
Identities = 438/467 (93%), Gaps = 14/467 (2%)
Strand = Plus / Plus
Query: 6 gaattcaaatt---cttcctcggtcatcagaatgagttccagaactggtggggctatgca 62
||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcaaattcagctt----ggtcatcagaatgatttccagaactggtggggctatgca 260
Query: 63 aagagaaatcttgtctcacaaataaaagccaatcattaaaaaa--aataataaaattatt 120
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aagagaaatcttgtctcaaaaataaaagccaatcattaaaaaaataataataaaattatt 320
Query: 121 tttaaaaaattaaaagccaacaccctcttaggcaccaagaaaagaactgaagtatttatg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaaaaattaaaagccaacaccctcttaggcaccaagaaaagaactgaagtatttatg 380
Query: 181 aacatatccgtgcaacagctcttgctgccctgattgtctggatatctttgcaaagaaaat 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aacatatccgtgctacagctcttgctgccctgattgtctggatatctttgcaaagtaaat 440
Query: 241 gaaaatgataagtggatattagcccagaaacttagtatagtgagatataaggtacaattt 300
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatggtaagtggatattatcccagaaacttagtatagtgagatataaggtacaattt 500
Query: 301 gcaaaacacatgaaactgaagaagaacaaagaccaaagtgtagacactttgccccttctt 360
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 501 gcaaaacacatgaaactgaagaagaatgaagaccaaagtgtagatactttgccccttctt 560
Query: 361 agaattggaaacaatcacccatggaaggagttcagagactaagtctggagctgatactaa 420
|||||||||||||||||||||||||||||||| || |||||||||| ||| || ||
Sbjct: 561 agaattggaaacaatcacccatggaaggagtt-----acaaagtctggagttgagacaaa 615
Query: 421 aggatggaccatctacagactgccatatccagggatccatcccataa 467
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 616 aggatggaccatctagagactgccatatccagggatccatcccataa 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no069_k02.g1 MSMg01no069_k02.g1 CHROMAT_FILE:
MSMg01no069_k02.g1 PHD_FILE: MSMg01no069_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:26 2005
(173 letters)
>mm_chr12_63541466_63542038
Length = 573
Score = 277 bits (143), Expect = 3e-79
Identities = 163/171 (95%), Gaps = 4/171 (2%)
Strand = Plus / Minus
Query: 1 ctccaatttcagtgactcaaaaggaaggtcatggagacaaagaacaagagtgttcttctt 60
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 369 ctccaatttcagtgactcaaaaggaagggcaaggagacaaagaacaagagtgttcttctt 310
Query: 61 tcatgtcttttttacaacctgccacaagatga--ttttttttccagattaaaagtcgatc 118
||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 309 tcatgtc--ttttacaacctgccacaagatgattttttttttccagattaaaagtctatc 252
Query: 119 ttcccacttcaaaagatccagattaaagttgggccctttcatgccaaatga 169
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 251 ttcccacttcaaaagatccagattaaagttgggccctttcatgtcaaatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space: 93225
Effective search space used: 93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
