BAC Information

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BAC

Clone NameMSMg01-070L15
Chromosome12 (Build37)
Map Location 106,314,888 - 106,315,129
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5
Downstream geneLOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L15.T7 (MSMg01no070_l15.b1)MSMg01-070L15.TJ (MSMg01no070_l15.g1)
ACCAG294679AG294680
length766689
length of high quality
(start - end)
371 (115 - 485)243 (71 - 313)
definitionCHROMAT_FILE: MSMg01no070_l15.b1 PHD_FILE: MSMg01no070_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:53 2005CHROMAT_FILE: MSMg01no070_l15.g1 PHD_FILE: MSMg01no070_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTNNNNNNNNNNNNNNNNNNNCCCNNNNNNNNCCNNNNNNNN
NNTTTTTTTCTCCTTCCTCNTACXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTCAAGAAATCCGCGGAATTCCTGATCCTCCCGCCTCAGCTTGCCTAG
TACAGGAATTACATCACTGTGCCCAGGTCTGTGTGGGGCTGGAGATCTGA
CCCATGGCTTTGCACAGGCTAGACCACTGTTCTATCAACTGATCTTAACC
CCTAGGCCTGTCAGGCATTTCCTAGGTGTCCAGCCTAGTTTCACATCAAC
TTGACACAGGCTAAAGTCACCTGAAAAAGGTGGACCTCAATTGACCAAGT
GCCTCCATAAGATCTGGGGGCAGGCAAACTTGTAGGGCATTTTCTTAATC
AGTGATCAATGGGAGAGGACCCCCACCATTGTGGTTGGCGCCATCCCTGA
GTTGGTGGTCATGGGTTCTGCAAGAAATCAAGCTAACCAAGCCATGGGGA
GCAAGCAGTAATCAGGTCCTGCCTCCAGGTTTCTGTCCCTGTTCTGTGGG
GCCTTACTTGGTAAAGTGTGTTTAGGAATTTTTTGAGCATCTTTTAAAAT
GCCTAGTTAGGCCCAGCTACCAGTTATGTGGCACAGGCCTCCAGACTACC
GTTCCCGTGACCCCATGAAACGTGTGCCTAGCCCCCCACCTGACAAAACG
CGATGAATGTCCCATTTGCCCCCTTTGTGTCTATAACCTCAGGGAGTTCA
TTTTATCATCCCTAGT
NCCATGAAGTGGTAGCCTGGCGGCGCCTGGTTCGTACTCGGGGTGAACTA
TAGAAGTTTCGCGAAATTCCAACCCAGGGCTCACTTGAAGGTGGAGTCCT
CTCAACTTGCAAAAAAAAAGGACAAGTGTTCTAGGAATCTAGGAAGATAG
TCTGGAAGATGGGGCAAGATCTGCACATACAGGGCTGGGCTACAGGATCT
TTCACTTACTGTGAAAGGAGTGAGCTGTTGGCAGAGAGAGGCACCTTCTG
AGGCCTGGGACAGAGGAAGACCCAGAGTGGTCAAAAGTGGTGCAGGACAG
AGCAGGGAGAGTTTTTTTCTGAGACTCAGTCTGAGAGTGAAGACTTGCTT
TCAATGACATGACATGGAAAGGCATGCTGTGCTCTAGGGAGGCCTTTAAA
ATAGGCAGGAACCGGCATTTCTGTTTTGTCTTCACTCACATAAGGCTGAT
CTGAGATGTCCTGAAAGGAAGCAGACTTGCTTTAGTTCTGGGCCAAATAG
TATGTGTGTGCGTGTGTGTGTGCGTGTGCGTGCGTGCATACACATAGATA
GGTAGATCGATAGATAGATAGATAGGTAGATAGATAGATTTATAGATAGA
TAGATAGATAGCTCCTGTCTTATTCAACGTCCACCTCTGCCTACTTACCT
TATTACTCCTTTGCCTCTGCATCCTCTCGCGCCCCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l15.g1 MSMg01no070_l15.g1 CHROMAT_FILE:
MSMg01no070_l15.g1 PHD_FILE: MSMg01no070_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:54 2005
         (243 letters)



>mm_chr12_106314688_106315331
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacccagggctcacttgaaggtggagtcctctcaacttgcaaaa-aaaaaggacaagtgt 59
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aacccagggctcacttgaaggtggagtcctctcaacttgcaaaacaaaaaggacaagtgt 260

                                                                       
Query: 60  tctaggaatctaggaagatagtctggaagatggggcaagatctgcacatacagggctggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaggaatctaggaagatagtctggaagatggggcaagatctgcacatacagggctggg 320

                                                                       
Query: 120 ctacaggatctttcacttactgtgaaaggagtgagctgttggcagagagaggcaccttct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaggatctttcacttactgtgaaaggagtgagctgttggcagagagaggcaccttct 380

                                                                       
Query: 180 gaggcctgggacagaggaagacccagagtggtcaaaagtggtgcaggacagagcagggag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggcctgggacagaggaagacccagagtggtcaaaagtggtgcaggacagagcagggag 440

             
Query: 240 ag 241
           ||
Sbjct: 441 ag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)