BAC Information

Click to search

BAC

Clone NameMSMg01-070O21
Chromosome12 (Build37)
Map Location 69,612,861 - 69,613,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070O21.T7 (MSMg01no070_o21.b1)MSMg01-070O21.TJ (MSMg01no070_o21.g1)
ACCAG294834AG294835
length732673
length of high quality
(start - end)
176 (36 - 211)454 (76 - 529)
definitionCHROMAT_FILE: MSMg01no070_o21.b1 PHD_FILE: MSMg01no070_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:10 2005CHROMAT_FILE: MSMg01no070_o21.g1 PHD_FILE: MSMg01no070_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTG
TTCACCGGGACTCCATAGGATATGAACCAGAAGATGGCCTAGTCGGCCAT
CAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTAC
AGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGGGAGCATGTGGGG
GATTTTTGGCATAGCACTGCACTTGTCAATGAAATACACTACCCCCCCCC
TATAATGAATTCCTCGAGAACCTTTATTCTATACTTGTAATCTCATCATC
TTGGTATTATTGTTATTTGCATGCCTCGACGTTATTAGTTGTGTTCCCAC
CTTCATTGCCCGTCCATATACATTGTCACCATTTACTTATTCTCTTTCTT
TCTTTTTGCCTATCTTTCTCGTACCTATGTTTTTTATTGTATATGCCCTC
CTGTCTTTAATCCTGTATTTTTGTTCTTATTTCAAATAACTTCAATTATT
ATAATTTTTCTCATCTATTCTTTGTCTTTCTTTTTTGGTGCTCCCTTCTT
TTTTCTCTCTGTTCATTTATCCTTTCATCTCCCATTTCCTCCGTCCTCTG
TTGTTATTTCATTCACTTCTCTTTTTCTTTTTTTTTTTTTTTGTCTCCTT
CCCTCCTCTTTCTTTCCTCTTATTATTTTCTTATACTTCTAATCCCCCCT
CTTTTCTCTTCCTCTCTATTCTTTTTGCCCAG
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGTCATGGGGGACCTTCCTTT
GATACCAAAACCTCTGGCCCTTTAACACTCAAGGACAGGAGTCTTAACAC
ATTCCTGTAGTCAAAACAGCGGCATTCAGGGATATCCTGTTAGTGTTACG
GGTAAAATCGGCTGAACTTTCTGCAATTACTTTCAGCCATCGCAATGATG
GAAGTATGCCTGGAAGATGACACAGCATGTGAATCTGTTACAACAAATGC
CCTCGCAAAGGACTCCTGCAACACCCTTGCAGGAAGAGTGACTTCAGTGG
TCCTATGGTTCTGACTGTTTTGCTGATGAGAGTGATGAACGTGTCCATTC
AGAAAAGTCAGTGGATTCATCAGGTTAATCCAACTCCAAGTCCTTAGGAT
CCGCTGTCATTCACTTGAGTAATAGCTGTAGTGTCTGTAAGTGAAAACAG
TCCTTTACATGAATAATCACTTCAGTGAACAAGCAAAGGTTAAGGAGAGA
GATCAGAGATTACATTTCAGAGTGGGAGTTAGCTTCTGCTCACTTAACTA
ATACATATTAAAGAGGATTTTACAATTTTTATGTGCTGCGAAAACTCAGT
GTCATTGTCAAGCAAGATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_o21.g1 MSMg01no070_o21.g1 CHROMAT_FILE:
MSMg01no070_o21.g1 PHD_FILE: MSMg01no070_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:10 2005
         (454 letters)



>mm_chr12_69612661_69613516
          Length = 856

 Score =  839 bits (434), Expect = 0.0
 Identities = 450/456 (98%), Gaps = 2/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagtcatgggggaccttcctttgataccaaaacctctggccctttaacactcaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagtcatgggggaccttcctttgataccaaaacctctggccctttaacactcaagga 260

                                                                       
Query: 61  caggagtcttaacacattcctgtagtcaaaacagcggcattcagggatatcctgttagtg 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 caggagtcttaacacattcctgtagtcaaaacagcgacattcagggatatcctgttagtg 320

                                                                       
Query: 121 ttacgggtaaaatcggctgaactttctgcaattactttcagccatcgcaatgatggaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacgggtaaaatcggctgaactttctgcaattactttcagccatcgcaatgatggaagt 380

                                                                       
Query: 181 atgcctggaagatgacacagcatgt--gaatctgttacaacaaatgccctcgcaaaggac 238
           |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||
Sbjct: 381 atgcctggaagatgacacagcatgtgagaatctgttacaacaaatgtcctcgcaaaggac 440

                                                                       
Query: 239 tcctgcaacacccttgcaggaagagtgacttcagtggtcctatggttctgactgttttgc 298
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 441 tcctgcaacacccttgcaggaagagtgacttcagaggtcctgtggttctgactgttttgc 500

                                                                       
Query: 299 tgatgagagtgatgaacgtgtccattcagaaaagtcagtggattcatcaggttaatccaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgagagtgatgaacgtgtccattcagaaaagtcagtggattcatcaggttaatccaa 560

                                                                       
Query: 359 ctccaagtccttaggatccgctgtcattcacttgagtaatagctgtagtgtctgtaagtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccaagtccttaggatccgctgtcattcacttgagtaatagctgtagtgtctgtaagtg 620

                                               
Query: 419 aaaacagtcctttacatgaataatcacttcagtgaa 454
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacagtcctttacatgaataatcacttcagtgaa 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 856
Length adjustment: 10
Effective length of query: 444
Effective length of database: 846
Effective search space:   375624
Effective search space used:   375624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)