BAC Information

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BAC

Clone NameMSMg01-072G20
Chromosome12 (Build37)
Map Location 66,013,620 - 66,014,001
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647
Downstream geneGm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072G20.T7 (MSMg01no072_g20.b1)MSMg01-072G20.TJ (MSMg01no072_g20.g1)
ACCAG295973AG295974
length705707
length of high quality
(start - end)
497 (41 - 537)459 (69 - 527)
definitionCHROMAT_FILE: MSMg01no072_g20.b1 PHD_FILE: MSMg01no072_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:10 2005CHROMAT_FILE: MSMg01no072_g20.g1 PHD_FILE: MSMg01no072_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCCGCGGAATTCAC
AGTTTGATGCCACGGTGCATCAGTGTGGTGAAGTCACAGCAGAGGCGGGA
GCTCGAGACATCACAGCACATCTACAGTCAACAGAGGCAGAGTGAATGCA
TGCACGCATGCTTATTTTCTCTTATACAGCTCCTGCCCCACAACACGGAA
TGGTGCTGCTACTTTGGGGCTTCATTTTTCCACATTAATTAAGACAATCA
AAACAGTCCCTAGTAGACATGCCCACAAGCCCATCTGATTTAGTTCCTTA
TTGAGAATCTCTTCCCCCATGATATTGTGTTGTAACAAGTTGATAATTAA
AACTGTCACAACTCACTACCCTTTCAACCTGATACACAAACACTTCTCTT
TATGTCTCAAGTTTATCTCCTAGTATAAAACATAGTTCAACTTTTATAAG
TCGTCAGAATCTTTAAGAACTCCACAATGTCAGATTTCACTTTCTTCCAT
CTCAGTCTGCACAGAGTTGAAGCTCCTATTTCTACTAATAGAAGTGTTCA
CAGGTTGCATAGTGTCTTCCCCCAACAAGAACCAAAAGAGCTACAGAAGC
AGCAAAGATTGTTTTCTGAAATAAATTGTCCTTGTCTTTGGATTGCTACA
AAATGACCGCAGACCCCTCCTTTATTTCCAAATGACCCAAACAGTGTCAT
CATGT
AATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACTCTCCCTCCCTGGGCTGCTTTTAAATAAC
AGGTGGACAAATCCTATCTGACTCATTCTGTCAAGTCTTATTCTGATTCA
TCACTGTCTCCATTAGACATCACTGTTTAGGATTAAAGGTATATGCTAAA
GGATTCCAGCCACAGGGATTAAAGGCATGTAACAAGTATTTGTCTACATT
CCAGTGGGATCACACAGATCTAGAAGGTCTTTGGATATGATCAGAGTATC
CATGTTGCTGACTTAAATTTTTTTTCTACAGAACTTCAATATACAGTATC
CCAAAGAAGTAGGCTCTAATGTCATTGAAGGACTTGCCAGTAAAAGTAAG
ACGAAGCATATAAAGAATGAGAACAATCTTCCTTCTTCCATATCCTTTAC
ATAGATTTCCATCAGAAAATGTGACCCAGATTAAATGTGCATCTACCTAC
TTCAAATGATTTAATTAAGAAATAAGCCCTCACAGATGAACCCAGATGCT
TGGTTTTTAGTTAATTCCAGATATCATAAGGTTGACAACCAAGAATAAGC
CATTACAACAAGAAGCCTGTCTTAGTTACTTTTCTATTGCTGTGATAAAC
CCTATGACTAACAGCACCCTGAATATGAAAGTACTTACTTCATCTTTTAG
TTTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_g20.b1 MSMg01no072_g20.b1 CHROMAT_FILE:
MSMg01no072_g20.b1 PHD_FILE: MSMg01no072_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:10 2005
         (497 letters)



>mm_chr12_66013106_66014002
          Length = 897

 Score =  708 bits (366), Expect = 0.0
 Identities = 378/382 (98%)
 Strand = Plus / Minus

                                                                       
Query: 116 gcatgcttattttctcttatacagctcctgccccacaacacggaatggtgctgctacttt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gcatgcttattttctcttatacagctcctgccccacaacacggaatggtgctgctacttt 837

                                                                       
Query: 176 ggggcttcatttttccacattaattaagacaatcaaaacagtccctagtagacatgccca 235
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 836 ggggcttcatttttccacattaattaagacattcaaaacagtccctagtagacatgccca 777

                                                                       
Query: 236 caagcccatctgatttagttccttattgagaatctcttcccccatgatattgtgttgtaa 295
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caagccaatctgacttagttccttattgagaatctcttcccccatgatattgtgttgtaa 717

                                                                       
Query: 296 caagttgataattaaaactgtcacaactcactaccctttcaacctgatacacaaacactt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caagttgataattaaaactgtcacaactcactaccctttcaacctgatacacaaacactt 657

                                                                       
Query: 356 ctctttatgtctcaagtttatctcctagtataaaacatagttcaacttttataagtcgtc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctctttatgtctcaagtttatctcctagtataaaacatagttcaacttttataagtcgtc 597

                                                                       
Query: 416 agaatctttaagaactccacaatgtcagatttcactttcttccatctcagtctgcacaga 475
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 596 agaatctttaagaactccacaatgtcagatttcactttctcccatctcagtctgcacaga 537

                                 
Query: 476 gttgaagctcctatttctacta 497
           ||||||||||||||||||||||
Sbjct: 536 gttgaagctcctatttctacta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)