BAC Information

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BAC

Clone NameMSMg01-073L07
Chromosome12 (Build37)
Map Location 30,898,158 - 30,898,399
singlet/doubletsinglet
Overlap geneSntg2
Upstream geneLOC629608, Myt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073L07.T7 (MSMg01no073_l07.b1)MSMg01-073L07.TJ (MSMg01no073_l07.g1)
ACCAG296938AG296939
length693699
length of high quality
(start - end)
333 (41 - 373)242 (76 - 317)
definitionCHROMAT_FILE: MSMg01no073_l07.b1 PHD_FILE: MSMg01no073_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:51 2005CHROMAT_FILE: MSMg01no073_l07.g1 PHD_FILE: MSMg01no073_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAAT
TCTTCAATTTCTATGAGCATGGAGGCTTTCTTGTGTTTCTATTGTTGTTG
AAGTCCAGCTTTAATCCATGGTGGTCTGATTAGATAAGAGGCATTATTTC
AATTTTCTTGTATCTGTTGAGGTTTGCTTTATGACTGAGTATATGGTCAA
TTTTGGAGAAGGATCCACGAGGTGCTGAGAAGAATGAGTATTCTTTTGTG
TTTGGGTGAAATATTCTATACATGTCTGTTAGGTCCGTTTGATTCATAAT
GTATCTGTCAGTTTCATTATTTCTTTGTTTAGTTTTTTGTCTGAATGACC
TGTTAATTGATAAGAATGGGCTTTTGAGGCCTGCCTCTATTATTGCGTGG
GGTTTGACGCACAATTTAATCTTTTGCAATATTTCTCTTTACTAACGTGC
TTGCCCTTGTATTTGAGGCATAGATGTTCAGAATTCTCACATCATCTTGG
TCTATTTTTTTCCTTTGACTTCTGTGATGCGGTCTTCTCTGTCTCTTTTG
ATAATTTTTCTTTGGAAGTCTATCTTATTACATAATAGAACGACCATTCC
TTCTTGTTTCTTGTTCCTACTCGCTCGGACTACCCCTCCACATTTTTTCT
TTCTGTGTCAACGCCTTATTGCTCATTCGTTTCCTGTTAGTTC
NCGCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGAGACACTTTCATCCAAAAGG
ATAGCATGAGCAGACACATATAGAAGTATATAGTGCTACAGTTGTTTTAA
ATTAAAAATGGGATTTTTATATTTGAATGTAACTCAGGTATACCAAAACT
TCGTTGTTTTTTTATTTAGTAGATTCACACTTATGTCTTTGTAAAAAGAG
GATCACAGGCATCTTTATTGCTCCTAGAATGGGGTATGGAGGAACGTTAT
GGAGGACATCTCAAGAGCATTGGGGAGGTAGGGTGCATATAACTCCCATG
CAGGCATCTGTTATAATCATATTCATTATACTTAGGGAATTGTTGCAGTG
CATTTCCCACTACCTTAGCTAAATGCTGCAGATTGGGTAACTAACAAAGA
CAAGCTCATGGACTCATTTTTATTTTCTGTTTACATGTACATATGTGTAC
TGATTTATGCGTAAGGATTCATGTGTATACATGTATGTAGATCCGATGAC
AATTCCAGTCGACACTCCCTCAGGTTCTCCGAAGTTTCTTTGGGATAGAG
GGTCGCACGTCTGTAACTTACCTAGCCGTCTAGGCTTGTTATTACGGAAC
GAACCTTCTTGTCTTTGGCTTCTCAGGGATTGGGATTACCAGTACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_l07.g1 MSMg01no073_l07.g1 CHROMAT_FILE:
MSMg01no073_l07.g1 PHD_FILE: MSMg01no073_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:51 2005
         (242 letters)



>mm_chr12_30897958_30898599
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggagacactttcatccaaaaggatagcatgagcagacacatatagaagtatatagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggagacactttcatccaaaaggatagcatgagcagacacatatagaagtatatagtg 260

                                                                       
Query: 61  ctacagttgttttaaattaaaaatgggatttttatatttgaatgtaactcaggtatacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacagttgttttaaattaaaaatgggatttttatatttgaatgtaactcaggtatacca 320

                                                                       
Query: 121 aaacttcgttgtttttttatttagtagattcacacttatgtctttgtaaaaagaggatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacttcgttgtttttttatttagtagattcacacttatgtctttgtaaaaagaggatca 380

                                                                       
Query: 181 caggcatctttattgctcctagaatggggtatggaggaacgttatggaggacatctcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggcatctttattgctcctagaatggggtatggaggaacgttatggaggacatctcaag 440

             
Query: 241 ag 242
           ||
Sbjct: 441 ag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)