BAC Information

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BAC

Clone NameMSMg01-073M19
Chromosome12 (Build37)
Map Location 115,536,383 - 115,536,672
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIgh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6
Downstream geneEG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073M19.T7 (MSMg01no073_m19.b1)MSMg01-073M19.TJ (MSMg01no073_m19.g1)
ACCAG297009AG297010
length715714
length of high quality
(start - end)
323 (44 - 366)290 (375 - 664)
definitionCHROMAT_FILE: MSMg01no073_m19.b1 PHD_FILE: MSMg01no073_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:59 2005CHROMAT_FILE: MSMg01no073_m19.g1 PHD_FILE: MSMg01no073_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATATTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTTAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAACTGCTCT
GTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTAT
CCTTGAGAAGAGTTC
NACGATGAAGTGGGAGGCCTGGNGGCCGCCTGGCTTTCTCACCTGGGTGA
ACTANAGAAGGACTGCAACATCAAGGGAAGACTTTGACAACAAAGTGGAT
GTAGGGATGTAGTCTGATCTTCTCCCCCAGTTAGCAATTCCCTTACATAT
GTAATAGACTGGGCTGAGACTATTTTAACCTAAAATTATAATTGAATTTA
ATAGTTATTTCAATGGAAATACTTGGTAATGTGATACACTGAAATTATAA
CAATTTATTAAACTGTAACCAAAAGGAATTTGTGGAAAAACTAACTTATC
ACACTTTCCTCTTAATGAAATTAAATTGATTAAATCAATCAAAAATTATA
AAATGAATATACTCCTTGATCTCCTTCAAAGTCATAAAGAAAATTACAAC
AGTATGTGTATCACATCTCTGCCACACACATCACTCTTTCCATTTCATGT
ACAAGACTCTTGCTGTGAATCAAACATGAAAACAATCCAAAGAAATATTC
AGTTTATGCTATGAAATACTAAGATCTAGGTGAACTCATAATATATAAAA
AAGTAACTACCTTGAATAGAAATTGCTATCTCTTCCTGAAAACTCCTATC
ATTAAAGGCTATAGCAAGAGGAGCTGTGATTCTACTGGTCATGGGGTCTG
AATACTTAACTATCTTTTTTGTTCACAGGGAACCTCTACATACAGCTTGC
ATGTAACTTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_m19.g1 MSMg01no073_m19.g1 CHROMAT_FILE:
MSMg01no073_m19.g1 PHD_FILE: MSMg01no073_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:59 2005
         (290 letters)



>mm_chr12_115536183_115536872
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaagtcataaagaaaattacaacagtatgtgtatcacatctctgccacacacatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaagtcataaagaaaattacaacagtatgtgtatcacatctctgccacacacatcac 260

                                                                       
Query: 61  tctttccatttcatgtacaagactcttgctgtgaatcaaacatgaaaacaatccaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttccatttcatgtacaagactcttgctgtgaatcaaacatgaaaacaatccaaagaa 320

                                                                       
Query: 121 atattcagtttatgctatgaaatactaagatctaggtgaactcataatatataaaaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattcagtttatgctatgaaatactaagatctaggtgaactcataatatataaaaaagt 380

                                                                       
Query: 181 aactaccttgaatagaaattgctatctcttcctgaaaactcctatcattaaaggctatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaccttgaatagaaattgctatctcttcctgaaaactcctatcattaaaggctatag 440

                                                             
Query: 241 caagaggagctgtgattctactggtcatggggtctgaatacttaactatc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagaggagctgtgattctactggtcatggggtctgaatacttaactatc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)