BAC Information

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BAC

Clone NameMSMg01-074P24
Chromosome12 (Build37)
Map Location 69,612,858 - 69,613,307
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074P24.T7 (MSMg01no074_p24.b1)MSMg01-074P24.TJ (MSMg01no074_p24.g1)
ACCAG297921AG297922
length716774
length of high quality
(start - end)
218 (36 - 253)450 (126 - 575)
definitionCHROMAT_FILE: MSMg01no074_p24.b1 PHD_FILE: MSMg01no074_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:33 2005CHROMAT_FILE: MSMg01no074_p24.g1 PHD_FILE: MSMg01no074_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAACGACTCCTATTCAAGAGGATCCGCGGAATTCCC
TTGTTCTCGGGACTCCATAGGATATGAACCAGAAGATGGCCTAGTCGGCC
ATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGT
ACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGGGAGCATGTGG
GGGATTTTTGGGATAGCATTGTAAATGTAAATGAAATAAATTACCCCCCC
CCAAAAAAGAAGTTCTGATAACCTTTAAACAACATTTGAAACTTTAACTC
TTGGTAGGATTGATTTATTCATGCGCTATGTTAGCGATGTGTTATTAGCA
TCTTTGTTCTCCCCCTCCCTTGCCTTTTTTAAGTAATCTTATCATTCTTG
TGCCTATACCCTTTACTTATAACTTTTCATTCGATTGTAGGGTGCCTCAC
CTTGTATTCCTATTGTTGTTTTCTATACCATTACCATCTACTTCTCTTTT
TCAGCCCTTTCTTTTTCCGTTATACTTTTATGCCCTTTTTTCCCTTTTCT
CGTCTCTACTTTTCTTACCTTGATTGCCTCTCCTTCTATTTTTTTTCCTG
TTTTTTCCTTATTTTTTTTTCTAACTTCTACCCTTTTTCTCCTTTTTCCT
CCTCACCTTGTTCTTTATACCCTTCCTTTTCCTACTCCCACCCCCTTTTC
TTTTTTTTTCTTTTTA
NNNNNNNNNNNNNNNNCCCCNNNNCCCCCCCNNCCCCCCCCCCCCCCCCC
TCATANNATCGATGATATGGGTAGCCTGGCGGCGCCTGTCCCAAACATTA
GGTGAACTATAGAATTTCCGCGCAATTCTCTGAGTCATGGGGGACCTTCC
TTTGATACCAAAACCTCTGGCCCTTTAACACTCAAGGACAGGAGTCTTAA
CACATTCCTGTAGTCAAAACAGCGGCATTCAGGGATATCCTGTTAGTGTT
ACGGGTAAAATCGGCTGAACTTTCTGCAATTACTTTCAGCCATCGCAATG
ATGGAAGTATGCCTGGAAGATGACACAGCATGTGAATCTGTTACAACAAA
TGCCCTCGCAAAGGACTCCTGCAACTATCCCTTGCAGGAAGAGTGACTTC
AGTGGTCCTATGGTTCTGACTGTTTTGCTGATGAGAGTGATGAACGTGTC
CATTCAGAAAAGTCAGTGGATTCATCAGGTTAATCCAACTCCAAGTCCTT
AGGATCCGCTGTCATTCACTTGAGTAATAGCTGTAGTGTCTGTAAGTGAA
AACAGTCCTTTACATGAATAATCACTTCAGTGAACAAGCAAAGGTTAAGG
AGAGAGATCAGAGATTACCTTTCAAAGTGGGAGTTAGCTTCTGCTCACTT
ACCTAATACCTATTAGAGAGGACTTTACAATTTTTATGTGCTGCGAAAAC
CCACCGTCATTGTCAAGCAAGATTTATGAACTGGAAAATGAGGAAATTCC
CTAAATAATTTTTTAAAAGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_p24.g1 MSMg01no074_p24.g1 CHROMAT_FILE:
MSMg01no074_p24.g1 PHD_FILE: MSMg01no074_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:33 2005
         (450 letters)



>mm_chr12_69612658_69613507
          Length = 850

 Score =  816 bits (422), Expect = 0.0
 Identities = 444/452 (98%), Gaps = 4/452 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctgagtcatgggggaccttcctttgataccaaaacctctggccctttaacactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgagtcatgggggaccttcctttgataccaaaacctctggccctttaacactcaa 260

                                                                       
Query: 61  ggacaggagtcttaacacattcctgtagtcaaaacagcggcattcagggatatcctgtta 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggacaggagtcttaacacattcctgtagtcaaaacagcgacattcagggatatcctgtta 320

                                                                       
Query: 121 gtgttacgggtaaaatcggctgaactttctgcaattactttcagccatcgcaatgatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttacgggtaaaatcggctgaactttctgcaattactttcagccatcgcaatgatgga 380

                                                                       
Query: 181 agtatgcctggaagatgacacagcatgtga--atctgttacaacaaatgccctcgcaaag 238
           ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||
Sbjct: 381 agtatgcctggaagatgacacagcatgtgagaatctgttacaacaaatgtcctcgcaaag 440

                                                                       
Query: 239 gactcctgcaactatcccttgcaggaagagtgacttcagtggtcctatggttctgactgt 298
           |||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 441 gactcctgcaac-a-cccttgcaggaagagtgacttcagaggtcctgtggttctgactgt 498

                                                                       
Query: 299 tttgctgatgagagtgatgaacgtgtccattcagaaaagtcagtggattcatcaggttaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttgctgatgagagtgatgaacgtgtccattcagaaaagtcagtggattcatcaggttaa 558

                                                                       
Query: 359 tccaactccaagtccttaggatccgctgtcattcacttgagtaatagctgtagtgtctgt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tccaactccaagtccttaggatccgctgtcattcacttgagtaatagctgtagtgtctgt 618

                                           
Query: 419 aagtgaaaacagtcctttacatgaataatcac 450
           ||||||||||||||||||||||||||||||||
Sbjct: 619 aagtgaaaacagtcctttacatgaataatcac 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)