BAC Information

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BAC

Clone NameMSMg01-075G15
Chromosome12 (Build37)
Map Location 34,423,846 - 34,424,165
singlet/doubletsinglet
Overlap genenone
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075G15.T7 (MSMg01no075_g15.b1)MSMg01-075G15.TJ (MSMg01no075_g15.g1)
ACCAG298237AG298238
length681677
length of high quality
(start - end)		319 (341 - 659)588 (90 - 677)
definitionCHROMAT_FILE: MSMg01no075_g15.b1 PHD_FILE: MSMg01no075_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:04 2005CHROMAT_FILE: MSMg01no075_g15.g1 PHD_FILE: MSMg01no075_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTNNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCC
AGAACAACCGCGGAATTCTATGTCATCCCCGAAAAGAGAAAACAGAAACA
AAGAAGGAGTGACCTACATCCTCCATTCTGTATGTAAAAGTCAGTGACGC
TCACCAACTTCCCTTAAAAGAAATTCTTGGGAAGAACAGACGAAAGCATC
TGGATAAAGAGGGTTAAAAACAATGCACTTGTCAAACATCTGGAGTATCT
ATTGAAAAATATTTTTTCTGACATGAATGCTTTGAGTATACCTGTAACCT
TAATAAAGGGGAGAAAAACTTCCCAGGTGTCTTTTATTTCCAAACAATGT
TAATGTGTTTTAAAGACTGTAGCTGGTTGCTATACCGTATGGTTTTAAGG
TTGAACTTTTAAAAGCTACATGTGATTTTGCTCAAGGGCTGTTTCCACAG
CCAATTTGATTAAGAGTAATTTTAAATGTCAGGAAATGTTTGAATGCTCT
GTATGAACCTACTACTCACAAAATTAGACATAATTTTTCACCCTTGAGTC
TTCTAATTGCTTTATCTAACTCTCTATGTTTAGTTCCCTTTTCTTTTTCT
TTTCATTTGATATTAGAGAATAATGGTAATTTAGCTAACTGTCAGAAAAT
TACTAACTATAAGTCATACTACAAACAGAAT

TTTTNNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGCAAGA
CACAGGGAAGCTCTTGGCCTAGTTGTTAGCATTACCACAATCCAGGCAGA
GTTGCCTGTGCCCCATTTTCTTCTCTGGAGACCTTAGGGTCACTGCAAGG
AGCTGGCATTTCTGTCTATCATGGGAAGCTTTTCCACGAAACATTTTAAG
TGCAGTAATTCACAGATCTCGGGAAAGTTTGACGACTATCTGTTAAATAT
ACCTGATTTTAAATGAACTTTACTTGGTCTTAGTTACTTGATTACAGCTT
AATCTTGAAAATATGTACAGGAGGCCAAGCAACGCTTGTTCCTATAAATA
AGCTACATTAGTATTTAGTACTTCTAAAGTATAGTTCTGTACACATTAAA
GAATGTGCAAAGTGACTATTAACTTGCATTTCTTAATCATCTTTAACAGT
TTACAAGGCAGTAGCTTTTATAAGACCAGCATTTGCATTTTCATTCCTGT
AAAGTTTAGCCATTAAAAAAATTACAAGTTTTGAATTGAAGCTCTTTCAG
TATCAAATAAAACTTTAAATCATAAAATACCAGTCCAAAGTCCACTTTGC
CTTTCTGGTCCTTTCATAATGCGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_g15.b1 MSMg01no075_g15.b1 CHROMAT_FILE:
MSMg01no075_g15.b1 PHD_FILE: MSMg01no075_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:04 2005
         (319 letters)



>mm_chr12_34423646_34424365
          Length = 720

 Score =  565 bits (292), Expect = e-165
 Identities = 313/320 (97%), Gaps = 1/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacaatgttaatgtgttttaaagactgtagctggttgctataccgtatggttttaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacaatgttaatgtgttttaaagactgtagctggttgctataccgtatggttttaagg 260

                                                                       
Query: 61  ttgaacttttaaaagctacatgtgattttgctcaagggctgtttccacagccaatttgat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttgaacttttaaaagctacatgtgattttgctccagggctgtttccacagccaatttgat 320

                                                                       
Query: 121 taagagtaatttt-aaatgtcaggaaatgtttgaatgctctgtatgaacctactactcac 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagtaattttaaaatgtcaggaaatgtttgaatgctctgtatgaacctactactcac 380

                                                                       
Query: 180 aaaattagacataatttttcacccttgagtcttctaattgctttatctaactctctatgt 239
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 381 aaaattagacataatttttcacccttgagtcttctaatcgctttatctaactccctatgt 440

                                                                       
Query: 240 ttagttcccttttctttttcttttcatttgatattagagaataatggtaatttagctaac 299
           ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 441 ttagttcccatttctttttcttttcatttgacattagagaataacggtaatttagctaac 500

                               
Query: 300 tgtcagaaaattactaacta 319
           ||||||||||||||||||||
Sbjct: 501 tgtcagaaaattactaacta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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