BAC Information

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BAC

Clone NameMSMg01-075I12
Chromosome12 (Build37)
Map Location 85,220,216 - 85,220,685
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325
Downstream gene2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075I12.T7 (MSMg01no075_i12.b1)MSMg01-075I12.TJ (MSMg01no075_i12.g1)
ACCAG298324AG298325
length716699
length of high quality
(start - end)
174 (74 - 247)516 (73 - 588)
definitionCHROMAT_FILE: MSMg01no075_i12.b1 PHD_FILE: MSMg01no075_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:13 2005CHROMAT_FILE: MSMg01no075_i12.g1 PHD_FILE: MSMg01no075_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGACAATCCGCGGAA
TTCTTTTATGTTTACCGCCATTTTGCCTGCATGTGTGTCAGGGTGACAGT
GTCAGATCTTGGGAGTCACAGACAGTTGTGAGCTGCCATGTGGGAATCAA
ATCCCGGTCCTCTGGAGGAGCATTCAGTGCTGTTAACCACCAAGTCATTT
TTCCAGCCCCTAAATCATTTTTTCTAAATAACTGTTTGTGCACCAATTGG
CTCTGGATTGAGCGGCAGACTTGCCAGGTCTCTGTGAGCCCAGTAGATCA
GTTCTTGTCTTTAAACGTTATTTTTTGTAGAGGTCAGGCCTGCTCCTTGA
CGCCGCTCTGCCTAGCTTCTGCCTTCTCATCCCCAGAGGCCTCTACATAG
CAGTAAGGATGCTTATCTCCCCCCCCCGCTGTTGCCTGCATTAAACAAAG
CCCTTGGCGTTACGCCTCACCCCTGCTTTGTTGTCACCACCTACCTCCAT
GTTCTCCATTTCACCTCCCCCGGAGCCCTTGATTCAATATCTACACTGTC
TCCCTCCTTCCTCTTTTCTTTCACCCTTCTATAACCGCCTATTCCTTCTG
TTTTATTTTTGGACCCCACTTCTCTCCTCTGACTCGCCTTCGCTGCCTTT
TATCACCTCCCATCTTTCTTTCTCCCCTTTTTTTCCTCTATCCTCCCGCT
CTCTCCCCATTTATTN
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAAAGTGAGTT
CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAA
AAAAAAAAAAAAAAGTTTTTGAGGGCAAGGACTGCACTTTATATTTATGA
TTGACCTAAGCAATTGAAAACTCTTCATGTTCTGTTAGCAAAAGTATTTG
TAGCAGATGTTTTTAGTTTTGGTAAAAATCTAAATTTTATAAACAAAATT
AGTTATTTTTTTTAAGGATTTTAGAATCAGGAATCTGTTTATTTTTTAAG
ATCAAACAACTATTTTTGTTATTGAAAATAGATTTTTTTCATAGAATATA
TTGATTACAGTTCTCCTCCCCCAACTCTGCCCAGATCCTTCCCACCCACC
CAAATCCATAAATACCCTTTTTTGTTCTCTATTATTAGAAAAAAAAAATA
GACATCTAGGGGAAAAAAGTATAAACAATCTTAGCCCAACCAGTTAGTAA
TTTTTGCTCTTGGAACTTTCTAAATTTGCTATACCTCAGGTTTGTTAGGT
ACAAAGCAACAATGTCAATAGCTCATTTTATGAGCTATTAGGATTAACTA
ACTTAACTCACACAAATTGCTTATGAAAAACTGGCAGCCTGTACTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_i12.g1 MSMg01no075_i12.g1 CHROMAT_FILE:
MSMg01no075_i12.g1 PHD_FILE: MSMg01no075_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:13 2005
         (516 letters)



>mm_chr12_85220216_85221131
          Length = 916

 Score =  789 bits (408), Expect = 0.0
 Identities = 454/478 (94%), Gaps = 17/478 (3%)
 Strand = Plus / Minus

                                                                       
Query: 2   aggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctg 61
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aggccagactggtctacagagtgagttccaggacagccagggctacacagagaaaccctg 411

                                                                       
Query: 62  tctcgaaaaaccaaaaaaaaaaaaaaaaaaagtttttgagggcaaggactgcactttata 121
           ||||    ||  |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 410 tctc----aa--aaaaaaaaaaaaaaaaaaaggttttgagggcaaagactgcactttata 357

                                                                       
Query: 122 tttatgattgacctaagcaattgaaaactcttcatgttctgttagcaaaagtatttgtag 181
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 356 tttatgattgacctaagcaattgaaaactcttcatgttctgttagcaaaaatatttgtag 297

                                                                       
Query: 182 cagatgtttttagttttggtaaaaatctaaattttataaacaaaattagt---------t 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||         |
Sbjct: 296 cagatgtttttagttttggtaaaaatctaaattttataaacaaaattagttttgttttgt 237

                                                                       
Query: 233 attttttttaaggattttagaatcaggaatctgtttattttttaagatcaaacaactatt 292
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttttttttaaggattttagaatcaggaatctgtttattttttaagatcaaacaactatt 177

                                                                       
Query: 293 tttgttattgaaaatagatttttttcatagaatatattgattacagttctcctcccccaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tttgttattgaaaatagatttttttcatagaatatattgattacagttctcctcccccaa 117

                                                                       
Query: 353 ctctgcccagatccttcccacccacccaaatccataaatacccttttttgttctctatta 412
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gtctgcccagatccttcccacccacccaaatccataaatacccttttttgttctctatta 57

                                                                     
Query: 413 ttagaaaaaaaaaatagacatctaggggaaaaaagtataaacaatcttagcccaacca 470
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  ttag--aaaaaaaatagacatctaggggaaaaaagtataaacaatcttagcccaacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)