BAC Information

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BAC

Clone NameMSMg01-075I17
Chromosome12 (Build37)
Map Location 33,021,728 - 33,143,757
singlet/doubletdoublet
Overlap gene2010109K11Rik
Upstream geneDld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
Downstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075I17.T7 (MSMg01no075_i17.b1)MSMg01-075I17.TJ (MSMg01no075_i17.g1)
ACCAG298334AG298335
length698711
length of high quality
(start - end)		589 (76 - 664)300 (325 - 624)
definitionCHROMAT_FILE: MSMg01no075_i17.b1 PHD_FILE: MSMg01no075_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:14 2005CHROMAT_FILE: MSMg01no075_i17.g1 PHD_FILE: MSMg01no075_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:14 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(33,021,728 - 33,022,316)(33,143,458 - 33,143,757)
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTATGTATACCACGACTAGCCTCGAACTCACAGAGCTCCTCC
TGCCTCTGCCTTCCCAGAGTGCTTGGATTAAAGGCGTGTGCTACAGTGGC
CAGCAAGTTTGGCTTTCTTGGTTCACTTTCTCTTTCTCTCACCACATGAC
CTCTCTTCTGCACCCACCATTTGCTGCTGGAGAATATTATGCCATCTCTG
TTGGAACGTGGTCACAAGGATGACACATGATGACTAATGCCTTGGGGACC
TGTGAGAGAGGCTCCAGGAGAACAGGCAGTGGGTCTTTTACTACAGGTGC
ATTCTGTTCACTGGATTGTTCTTGGGTGTGATTTCATGCCTCTTATGACA
AACATTTATATTCAATTTATTACACGTTTATTCTTGTTGGATGTCAGATC
ATAACCATAAACCCCAATCTGGCCAGTGTGCCCTGAATCTGCATATGGCC
TCTGCCTTGCTTTCATGCCTTCCCAGGTATAATGTTTAATATGTGTCAGG
CAATTGTGTTTTAATTGCTCTGTCCTGAGAAAGTTCTGGAAAAGGCTGCT
CTATTAATATTTAGTATGTGCCTACTGGAATTTATCTACATGTTTTTTCT
GATCATGTTTTTCTGAACTCAAACAACCTTTCTTGGGCCACTGCTTTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCGAAATAAACCTTTAGATCTGACAACATCTGGGAAGT
TATTGGGAACACTTGAAAAACGAAGATTCAGCAGGCATGCCAAACAGAAG
TAGGAAGAGGAAATTACAGGTAACACTGTGGCATTATTTACTTTTCCCTC
ATGAGTGGACAGCAGGATGTTACACGGACTATACACTAGACTAAATGAAT
ATTATGTGTAAAGCCACTGCCTTTTATGAAGGCCACCATCAAAGATATGG
GCAAAAATAATGAATCAGGGTACNATTGCTCTTCTCAATATTACTTTTAT
TTTTATTTTCCTTTGGAAACCACTCCCCCTCCCCAAACCCACATTATTTA
ATATGCTTTTGATGGCTATTTAAAAACAATTTAAATGTTTTCATTTTAAG
GTTTTAAATTTCTGAACCTTAAATGCAACAAATCTCTGCAGGCAGGGTGC
ACAGAAACGCTCTTTGTAGCCCTCAGTAATTACAGAAGGAGCTCCTGGCC
CTAGCTATGAGTTGCTGTTGATTAGAGAAGAGTGCCTGTGAGGAAGCTCC
TCCATCATGTGTCCACAGTGTAGCTGCCTCTGAGGTATCCAGAGAGAGAT
ATTTTTAGGAAGTATTGTCTAGATGCCATGGCTGGAGAAAGCCAAGCTTC
TTGCTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_i17.b1 MSMg01no075_i17.b1 CHROMAT_FILE:
MSMg01no075_i17.b1 PHD_FILE: MSMg01no075_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:14 2005
         (589 letters)



>mm_chr12_33021528_33022516
          Length = 989

 Score = 1093 bits (565), Expect = 0.0
 Identities = 583/589 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctcgaactcacagagctcctcctgcctctgccttcccagagtgcttggattaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 agcctcgaactcacagagctcctcctgcctctgccttcccagagtgcttggattaaaggt 260

                                                                       
Query: 61  gtgtgctacagtggccagcaagtttggctttcttggttcactttctctttctctcaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgctacagtggccagcaagtttggctttcttggttcactttctctttctctcaccac 320

                                                                       
Query: 121 atgacctctcttctgcacccaccatttgctgctggagaatattatgccatctctgttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacctctcttctgcacccaccatttgctgctggagaatattatgccatctctgttgga 380

                                                                       
Query: 181 acgtggtcacaaggatgacacatgatgactaatgccttggggacctgtgagagaggctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtggtcacaaggatgacacatgatgactaatgccttggggacctgtgagagaggctcc 440

                                                                       
Query: 241 aggagaacaggcagtgggtcttttactacaggtgcattctgttcactggattgttcttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagaacaggcagtgggtcttttactacaggtgcattctgttcactggattgttcttgg 500

                                                                       
Query: 301 gtgtgatttcatgcctcttatgacaaacatttatattcaatttattacacgtttattctt 360
           ||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||
Sbjct: 501 gtgtgatttcatgcctcttatgacaaatattaatattcaatttattagatgtttattctt 560

                                                                       
Query: 361 gttggatgtcagatcataaccataaaccccaatctggccagtgtgccctgaatctgcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggatgtcagatcataaccataaaccccaatctggccagtgtgccctgaatctgcata 620

                                                                       
Query: 421 tggcctctgccttgctttcatgccttcccaggtataatgtttaatatgtgtcaggcaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcctctgccttgctttcatgccttcccaggtataatgtttaatatgtgtcaggcaatt 680

                                                                       
Query: 481 gtgttttaattgctctgtcctgagaaagttctggaaaaggctgctctattaatatttagt 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgttttaattgttctgtcctgagaaagttctggaaaaggctgctctattaatatttagt 740

                                                            
Query: 541 atgtgcctactggaatttatctacatgttttttctgatcatgtttttct 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtgcctactggaatttatctacatgttttttctgatcatgtttttct 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_i17.g1 MSMg01no075_i17.g1 CHROMAT_FILE:
MSMg01no075_i17.g1 PHD_FILE: MSMg01no075_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:14 2005
         (300 letters)



>mm_chr12_33143258_33143957
          Length = 700

 Score =  542 bits (280), Expect = e-158
 Identities = 295/300 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgctcttctcaatattacttttatttttattttcctttggaaaccactccccctcccc 60
           |||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||
Sbjct: 500 attgctcttctcaatattacttttatttttattttcctttggaaattagtccccctcccc 441

                                                                       
Query: 61  aaacccacattatttaatatgcttttgatggctatttaaaaacaatttaaatgttttcat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 aaacccacattatttaatatgcttttgatggttatttaaaaacaatttaaatgttttcat 381

                                                                       
Query: 121 tttaaggttttaaatttctgaaccttaaatgcaacaaatctctgcaggcagggtgcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 tttaaggttttaaatttctgaaccttaaatgcaacaaatctctgcagacagggtgcacag 321

                                                                       
Query: 181 aaacgctctttgtagccctcagtaattacagaaggagctcctggccctagctatgagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaacgctctttgtagccctcagtaattacagaaggagctcctggccctagctatgagttg 261

                                                                       
Query: 241 ctgttgattagagaagagtgcctgtgaggaagctcctccatcatgtgtccacagtgtagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgttgattagagaagagtgcctgtgaggaagctcctccatcatgtgtccacagtgtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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