Query= MSMg01no075_o17.b1 MSMg01no075_o17.b1 CHROMAT_FILE:
MSMg01no075_o17.b1 PHD_FILE: MSMg01no075_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:42 2005
(501 letters)
>mm_chr12_78207706_78208606
Length = 901
Score = 799 bits (413), Expect = 0.0
Identities = 467/509 (91%), Gaps = 38/509 (7%)
Strand = Plus / Minus
Query: 1 tttaaacgtctattcattccgtggatgtttgtctctctattttgttacctctcccatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttaaacgtctattcattccgtggatgtttgtctctctattttgttacctctcccatgta 490
Query: 61 tgggatccccactacacacacactcccctatatacaccacccctgtatacaccaccccag 120
||||||||||||||||||||||||||||||
Sbjct: 489 tgggatccccactacacacacactccccta------------------------------ 460
Query: 121 tatacaccacccctgtatacaccaccccagtatacaccacccctgtacacattccccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tatacaccacccctgtatacaccaccccagtatacaccacccctgtacacattccccact 400
Query: 181 gtttacacactcccctgtaaacacaaacccttataaacagtccctaccccatatatactc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 399 gtttacacactcccctgtaaacactaacccttataaacagtccctaccccatatatactc 340
Query: 241 tcccctgtatattctaccc--------atatatatatatatatatatatatatatactcc 292
|||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 339 tcccctgtatatactacccatatatatatatatatatatatatatatatatatatactcc 280
Query: 293 cttgtatatatgccccttgtatatactcatcctgtatatatttcccctttacacacttct 352
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 279 cttgtatatatgccccttgtatatactcatcctgtatatatttcccctttatatacttct 220
Query: 353 ccctatgtatacttctatatatatgccccatatatacctcccttgtatatactcctcctt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ccctatgtatacttctatatatatgccccatatatacctcccttgtatatactcctcctt 160
Query: 413 ttacacactcttcctatatgcatactccctgcatacatacactctcctgtatacaatcat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttacacactcttcctatatgcatactccctgcatacatacactctcctgtatacaatcat 100
Query: 473 tgatatacactccccctgtaaatatcata 501
|||||||||||||||||||||||||||||
Sbjct: 99 tgatatacactccccctgtaaatatcata 71
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 260 atatatatatatatatatatatatatata 288
|||||||||||||||||||||||||||||
Sbjct: 285 atatatatatatatatatatatatatata 313
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 260 atatatatatatatatatatatatatata 288
|||||||||||||||||||||||||||||
Sbjct: 287 atatatatatatatatatatatatatata 315
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 260 atatatatatatatatatatatatatata 288
|||||||||||||||||||||||||||||
Sbjct: 289 atatatatatatatatatatatatatata 317
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 260 atatatatatatatatatatatatatata 288
|||||||||||||||||||||||||||||
Sbjct: 291 atatatatatatatatatatatatatata 319
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 261 tatatatatatatatatatatatatata 288
||||||||||||||||||||||||||||
Sbjct: 284 tatatatatatatatatatatatatata 311
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 260 atatatatatatatatatatatatatat 287
||||||||||||||||||||||||||||
Sbjct: 293 atatatatatatatatatatatatatat 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 7
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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