BAC Information

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BAC

Clone NameMSMg01-076B18
Chromosome12 (Build37)
Map Location 35,729,809 - 35,729,914
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneSnx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B18.T7 (MSMg01no076_b18.b1)MSMg01-076B18.TJ (MSMg01no076_b18.g1)
ACCAG298764AG298765
length712842
length of high quality
(start - end)
106 (79 - 184)---
definitionCHROMAT_FILE: MSMg01no076_b18.b1 PHD_FILE: MSMg01no076_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:58 2005CHROMAT_FILE: MSMg01no076_b18.g1 PHD_FILE: MSMg01no076_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCTGACCACAGTCATTGTACTAATTATTACTGTCTAGCTG
TGCTAATTACTGTCACAGGACAGTGGGATGTCCAGTTATTACAGGAGCAG
GGAGTGGTCCTGAGTTGTTAGAACAAACTGTGTAGTTGAAATAACTTGTG
CGTGGTGTGTTGGAAGAGGTGTGTGCGCTTCGACCCTTTCTACACCTCTT
CTTTCTCCTATATTCCCCTATTCCGCCTCGCTAAATCTTCTCGTTCTTCC
TATCATCCCTCTTCTCTTCTTCCCTTTCCCTCCCTTCTTACTGCTCTTTC
CATTTCCATGCTCTCTTTTCCTCCCCCCTCTCTTCCCCTCTTCTTTTTTT
CTTCCGCCTCCTCCCCTTCCTTCTTCTTTCTTTTTTTTTCCCCTTCCCCC
CCCTCTTTTTTTTCCCCCCCCCTTCCCCCCCCTTACTCTTTCCTCTCCCC
CCTCCTCTCTTACCCCCCCCTCTCCTTTCTCTTTCTCTCCCCCCTCCCTT
TTCCATCTTCTCTTTCGCCCTCTCCTTCTCCTCTTCTTCCCCTCCCCTCC
CCCCTTTCCCCCCTCTTTCCTCCGCTTCCCCCCCTCCCTTTTTCTCTTCC
TTTCTCTTCTCCCCCCCCCTTCCCCCCCTTTTCCTCTCCCTTCTATTTTC
CCCCCTCTCCTC
CTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGACCTGCCGGTGAGATACTA
GCTTTGGCTCCGACTGTCTTACCAACGACGATGGTGTAGCGAAGGTGTTA
AAATATGTTCCTTTAGAATCCAGACTAAACAAACAATTGTTGGGATCTAC
CAAATTTCACTTCAACCACAACAAAACCCTTCAAAAAATGTGGTGAGGGA
CGTAAAAAAGGTAACAGCGGTGAAGGCGAGTACGCAACGTCTCCTCTCAT
CCGCGCTGGCGACGGGCTTTCGTCCTTTTCCCTTCCATATTTCCGTTGCG
GACAGGGGTTTTTTTTCTTTTTCTTCAGTCCCTTTTTTACTAGAGTTACC
TCGCGAGTTCGACTAGTTCTGGTTTTCACCCACGTCCTTTTATTCGCACA
GCACAGCCTATCTTTATATCTTTTATTGAGGCGGGGGCCCCCCTATGAAA
TTCAATTACGATGTAGTTCCGGGTCAGCGTTCCCACGTCGAGCAGTTACG
TGCTTCCAATTACGTTCCAGCTTTTTTACAAATAGCGCCACAGGCTGAAT
GCAGAGTTTACTATCCCCCCACACCCTTTGCAGTTTGAGTTGCCTTATTC
CAAACCGTATAACGCATAGTTAACATACCAAACTTACACAACGCGTTAGG
GTTGTGCGCTTTAGGGAGGCCCGTTTATCGTCGTTCTATCATAACAAGAC
CTTACCATTCGTTTGTTTTGCCCCGAATTGCTGTTGGTATGTGTATCCTC
CTATCCTCTCGCTTTTCCGGACGGTAATCACTACCGGTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b18.b1 MSMg01no076_b18.b1 CHROMAT_FILE:
MSMg01no076_b18.b1 PHD_FILE: MSMg01no076_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:58 2005
         (106 letters)



>mm_chr12_35729609_35730114
          Length = 506

 Score =  197 bits (102), Expect = 1e-55
 Identities = 105/106 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaattattactgtctagctgtgctaattactgtcacaggacagtgggatgtccagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaattattactgtctagctgtgctaattactgtcacaggacagtgggatgtccagtta 260

                                                         
Query: 61  ttacaggagcagggagtggtcctgagttgttagaacaaactgtgta 106
           ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttacaggagcagggagtgggcctgagttgttagaacaaactgtgta 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)