BAC Information

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BAC

Clone NameMSMg01-076H18
Chromosome12 (Build37)
Map Location 14,880,385 - 14,880,494
singlet/doubletsinglet
Overlap genenone
Upstream geneAW125753, LOC100043256, Map1lc3-ps7
Downstream geneLOC668492, LOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H18.T7 (MSMg01no076_h18.b1)MSMg01-076H18.TJ (MSMg01no076_h18.g1)
ACCAG299051AG299052
length714722
length of high quality
(start - end)
311 (67 - 377)110 (75 - 184)
definitionCHROMAT_FILE: MSMg01no076_h18.b1 PHD_FILE: MSMg01no076_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005CHROMAT_FILE: MSMg01no076_h18.g1 PHD_FILE: MSMg01no076_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGCCGCGGA
ATTCTGTTTAGCTCCGTACTCCAGTTTTTTTAATTGGGTTATTTGATTTT
TGGAGTCTAATTTCTTGAGTTCTTTAATGTATTTTGGATATTAGATTTCA
ATTGGATGTAGGGTTAGTGAAGACCTTTTCCCAATCTATAGGTTGCCATT
TTGTCCTATGATAGTGTCCTTTGCCTTACAGAAGCTTTTCAGCCTTATGA
AGTCCCATTTGTCAATTGTTGATCTTATAGCCTGGGCCATTGGTGTTCTG
TTCAGACAATTTCCCCCTTTGCCAATTCATTTGAGGCTATTTCTCACTTT
CTCTTCTATTAGATTCAGCATATCTTGTCTTATATTAAGTTTTTTTGATC
CACTTGAACTTGACCCCCCCCACAAACTAATAAATAATGATCGATCTCCT
TTACCTCACTTGCATACCACCACTTACATCAGCACCATTTGCCGACGATG
CTGTCTTTTTCACCACTGCATGGTCTGTGATCATGTTTCTCCGCGGTGCC
CCTCCCCTTTTCACTGACCCTCAGCTCCTATCCACCGTTCTACTTATCTC
TCAATGCTAAATCGCAGACTTTCCATTCCTTTCTGCAACTAACTGTGCAT
GTCCGTTCATACTCCCCCCCCCTTCCTCCCTTTTTCCCTTCACCTCTTTC
TTCCCCCCTCCCTG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATGTTTTTATTATTAAAACAAGAA
AGATATTAAAAGCTTCAAAATTCAAGTGCAATTTAGAACACAAGCTAATG
AATGATTCTTGTGATAGATTCTTCCCAAGGAATAACAGAGTCTGTGACTA
TTTTCTGTCCAATAAATACTTTGATTAAGATATCTACAAATTTTTATTTT
GGATCATATTGTCATATTTTTAAAAACTATTATCAGATTTACATACATAT
AATTATTTACCCGCTTGCTCAATAACTATCACCGTGCGTTCATGCATTTA
CATACATACGTGCCACTCTCTCTCTACATCTACCACATCCATGTTTATAT
GCACCCATCCATTCCCCCCCTCTTCCCCCTTTCCTTTTCCTTCATTCCTC
TTGCTTCTCTTATCATTCCCCTACTTACTTCTCCTTCTATACTTCCCATT
TTATCCATTGCTCCCTTTTTCATTTCACTTTTCTTTCCCCCTCCTTTTTC
CCTTTCCTTCTTTTTCCCACCCTTTCCCTCCATCCCACCCCCCTCCCTCC
CTTTCTCTTTCCCTTTTCCTTTCCTTTTTCTTCTTCTTTTTTCCCCCCCT
CCTTCCTTTTTTTCCCCTATTCCTTTCTTTTTTTCCTCCCTCCTCACCTT
TCCCCACCTTCCCTCCTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h18.g1 MSMg01no076_h18.g1 CHROMAT_FILE:
MSMg01no076_h18.g1 PHD_FILE: MSMg01no076_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:28 2005
         (110 letters)



>mm_chr12_14880185_14880694
          Length = 510

 Score =  205 bits (106), Expect = 6e-58
 Identities = 109/110 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgtttttattattaaaacaagaaagatattaaaagcttcaaaattcaagtgcaattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 caatgtttttattattaaaacaagaaagatattaaaagcttcaaaattcaagtggaattt 251

                                                             
Query: 61  agaacacaagctaatgaatgattcttgtgatagattcttcccaaggaata 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaacacaagctaatgaatgattcttgtgatagattcttcccaaggaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)