BAC Information

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BAC

Clone NameMSMg01-076L17
Chromosome12 (Build37)
Map Location 74,769,723 - 74,769,851
singlet/doubletsinglet
Overlap genePrkch
Upstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneEG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L17.T7 (MSMg01no076_l17.b1)MSMg01-076L17.TJ (MSMg01no076_l17.g1)
ACCAG299238AG299239
length716801
length of high quality
(start - end)
132 (67 - 198)129 (181 - 309)
definitionCHROMAT_FILE: MSMg01no076_l17.b1 PHD_FILE: MSMg01no076_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:49 2005CHROMAT_FILE: MSMg01no076_l17.g1 PHD_FILE: MSMg01no076_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGCGCTAAACGACTCCTATATCCAGAGGATCCGCGGAATTCTC
CTTAATATCCCAAGAGGTTTCGTTTTCTCTCTCTCTTGCTTTTCGGCTCT
CTTGCTTCTTGCTCTCTTGCTGCTTACACTCCTGCTCCTGAAGATGTAAG
CAATAAAGTTTTGCCGCAGAAGATTTTGGTCTGTGGTGTTCTTCCTGTCC
GGTCGCGAGAACGCGTCTAATAACATTACCCAGTCCTCCCAACAAGAAAG
ATTCAAACTATGAAGCCCATTTTCCCACAAGCAAAGATGTTCACGGGCTT
CTAGAAGAGGAAGAAAGGTCATAGGTCATTTAGTCTCATCCATCCAGTTT
GAATAGATTCAAGGATCTGGGTAGATGGCCTGGGAGCCCCATAGCACAGG
TGATAGATTTGACACAGCATAAGACTGTTTGAACTTTTAGATTCTCGACA
TCCTCCACCAGTAAGCCCCATAAAATGGGCGACATCTAAGGACAATGGGC
GATGGAGGTAAGAGCTATTGGTCTTGCTTTGCGTTTATAGTGAAGTGTTT
TCCCTGCACAGTTGTCTTCATTTTCTAGAAAGGCCGACTTTGCCCGCATG
ACTCTCTCTGACTTGTTCTTCCCCTTGTTGTGTTGCCTGCCGTTCACTTT
TCTCCCCTCATTTTTTATTTTTTTGCTCCTACTTTTCCTCTCCCCACCTC
TGTTCCCTTTTCATGT
TTTTTTTTTTTTNNNNTTNTTTTTTTCTCCTCTTCTTTCCCCCTCTACAC
NATTAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGGGCAAGTGGGGAGGG
AACAGAAGAAAGAAAATGTGGAGAGATGGTAAGGGGAACCAGATCTCAGG
ACGAGACCTCGGCCTCTTCTTCACTCCAAGCAGCTGAGCCAAGTTAGAGG
CGGTGAGCTAAGAAAGTGTCCACTTAGTCTGAGGCAAATTTTCAAAATGC
ACAAGGTTCTAGCTTATTAGTACGAACATATTTTATAACTAAAGGTGAGT
AGCAGTGTGTGCTGGCAGAAGACTAGGTAAGCATAATTATGGAGAGATAG
AGGATATCTTTGGGTAAAGCCACAATCCTGGCACATAATACAATGCGCCT
GACTTTGGGGTACACTACGTTGTCGCCACCAGAAGGCTGCAAAAATCGTA
AAGATACTGTAATATGCCGCGTATGTGACGCGTCTTCTCTTTTGAACGCC
TATTACCCAATGTCACCTGTTGTTTGTCAGTGTCATTGATGATCCCGTTG
CTGAGTTGACTCTCCATTTCCACCTTTTTGCACCACGACCAGGTTTCTCC
AATATAACTATTACTGCTTGCTTTCCCCCGCTGTCTGACTCACATTAATT
TTTGCGCTCTCTAACCTATTGATCTAGGTTATGTTATCGTTGTTTCGCCG
TTTCTCTAGACGCTACTCTTAATTATATTCTCTATATCTTCTCCGACGAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l17.g1 MSMg01no076_l17.g1 CHROMAT_FILE:
MSMg01no076_l17.g1 PHD_FILE: MSMg01no076_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:49 2005
         (129 letters)



>mm_chr12_74769523_74770051
          Length = 529

 Score =  242 bits (125), Expect = 7e-69
 Identities = 128/129 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggggaaccagatctcaggacgagacctcggcctcttcttcactccaagcagctgagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaggggaaccagatctcaggacgagacctcggcctcttcttcactccaagcagctgagcc 270

                                                                       
Query: 61  aagttagaggcggtgagctaagaaagtgtccacttagtctgaggcaaattttcaaaatgc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagttagaggtggtgagctaagaaagtgtccacttagtctgaggcaaattttcaaaatgc 210

                    
Query: 121 acaaggttc 129
           |||||||||
Sbjct: 209 acaaggttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)