BAC Information

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BAC

Clone NameMSMg01-078I06
Chromosome12 (Build37)
Map Location 73,451,288 - 73,451,665
singlet/doubletsinglet
Overlap geneRtn1
Upstream geneLOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Downstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078I06.T7 (MSMg01no078_i06.b1)MSMg01-078I06.TJ (MSMg01no078_i06.g1)
ACCAG299832AG299833
length733720
length of high quality
(start - end)
240 (70 - 309)378 (67 - 444)
definitionCHROMAT_FILE: MSMg01no078_i06.b1 PHD_FILE: MSMg01no078_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:51 2005CHROMAT_FILE: MSMg01no078_i06.g1 PHD_FILE: MSMg01no078_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAATTTGCGGCGCTAAACGACTCCTANATTCTGAGCTGCGCGGAATTC
AGAGAACTTTCCCAAACAGAGAAAGACTGGNGAAGAGTCAGCTCCTTTAC
TGGTTGCACCACACACAACTTATAAAGGAATGAGTGTCTTCTTCAGATAC
TACAGTGGTGGCCACACCCCTCCACTGAGCTCTGTCTTCCCTTCCTTCTC
CCCCCTCTCCTACCTGAAGACGGCTCTGGACTGCCTGCCTAGCCTAGATT
TCTCTAAGGCATGGGATAAACAGACTTGGACAGTTAAGCAGCCTTTGTCC
TGAGCTGTATGGGGATTCACTGATTATAGGCTGGACTCCTCCTGGACAAT
GTGTTGAAATCCTCACTCTCAATGCGGCTGACCTGATCATCCAGGTACTT
GGTAAGGCCATTATAAGAGGACGGTACCCTTTTGAATGACACTGGTCCCC
TTCACAACCAGTTTAATCCTCTTTATTGGAGCCCCAGAGAACTCTTGATG
TCTTGCAAGGACCCAACATTTAGATAGCAGCTCATAATTCCATCAACCAG
GCCCTTTTGTTTACAGATTTATCACCTACGGCTAGAAATGTGTTCTGCCC
TCTCACCCTTTTTCCCCCAGAGCTCCATGGCACTTCGATTAAAAAAAACC
TGAACTGGGTTGGCTCCTTTGTTGTCTACTTGTACCATGCTTGCAGTCAT
CCCCCTGGTTGTCTTCCCTTGGAGTCAACGCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGTGACTCTTTTAGAATTTGGAGGTGTTATTTG
TAAGTGATAGAATCTACACTGAGTTCATGTATAAACTTAGCACATCTGAT
CACTCATTAATTCGACAAACCTTTATTGAACCAATTTGTGCAAAGCACTA
TGCTAGACACTGTCAATAGGAGAAAATAAGACACTGCCCTTCAGGGGCCC
AAAGCCCAATAGGCTTTAAGGGTAAAGATCATATGATAAATGCAAGCAGA
CGGAAGTTGTTGTGAGAACCTTAAGAGATATTTAATACTGTCTACAGAGG
CAGAGGAAAACTGTGGCTTCAATGGAGGGTATGCTGAGCTGAGTTTTGAA
GCCTGAACAGGAATTCATTAGCCCAGGAGACAACTACTAGCCAAGACAGG
GTTTAATGGAGTAGTATGAATATCTGAGACAATACAGATGGCCCATGTGT
CAAGTAGTGCCATGATAGGAACAATGCGGTACAGGAAGATGCTGATGAAT
TCCAAGCTTGTATGCAATTGAAGTAACTACTATATTCCCTCGCCAATAAG
TTGGGCTAATTTCCTTGTTCCCACTGCCGCTCTCTGAATGTTTTCACTAT
TTTTAATGCTCATCACTACTTTTGTTAATATCTCTCCTCCGCCTTACTAA
ACCCCTACTGTCCCTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_i06.g1 MSMg01no078_i06.g1 CHROMAT_FILE:
MSMg01no078_i06.g1 PHD_FILE: MSMg01no078_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:52 2005
         (378 letters)



>mm_chr12_73450891_73451668
          Length = 778

 Score =  692 bits (358), Expect = 0.0
 Identities = 373/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtgactcttttagaatttggaggtgttatttgtaagtgatagaatctacactgagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aagtgactcttttagaatttggaggtgttatttgtaagtgatagaatctacactgagttc 716

                                                                       
Query: 61  atgtataaacttagcacatctgatcactcattaattcgacaaacctttattgaaccaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atgtataaacttagcacatctgatcactcattaattcgacaaacctttattgaaccaatt 656

                                                                       
Query: 121 tgtgcaaagcactatgctagacactgtcaataggagaaaataagacactgcccttcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgtgcaaagcactatgctagacactgtcaataggagaaaataagacactgcccttcaggg 596

                                                                       
Query: 181 gcccaaagcccaataggctttaagggtaaagatcatatgataaatgcaagcagacggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcccaaagcccaataggctttaagggtaaagatcatatgataaatgcaagcagacggaag 536

                                                                       
Query: 241 ttgttgtgagaaccttaagagatatttaatactgtctacagaggcagaggaaaactgtgg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 535 ttgttgtgagaaccttaagagatatttaatactgtctacagaggtagaggaaaactgtgt 476

                                                                       
Query: 301 cttcaatggagggtatgctgagctgagttttgaagcctgaacaggaattcattagcccag 360
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 475 tttcagtggagggtatgctgagctgagttttgaagcctgaacaggaattcattagtccag 416

                             
Query: 361 gagacaactactagccaa 378
           ||||||||||||||||||
Sbjct: 415 gagacaactactagccaa 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)