Query= MSMg01no078_j04.b1 MSMg01no078_j04.b1 CHROMAT_FILE:
MSMg01no078_j04.b1 PHD_FILE: MSMg01no078_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:56 2005
(506 letters)
>mm_chr12_31593376_31594281
Length = 906
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 5 gaattcatctgtaccctcctcaaattttccgaggctagcaactgactaca-cacatctaa 63
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 gaattcatctgtaccatcctcaaattttccgaggctagcaactgactacaacacatctaa 263
Query: 64 cttctgaagctatccctgcttcttccagggcctcctgtagcctaatctccacaatgcagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttctgaagctatccctgcttcttccagggcctcctgtagcctaatctccacaatgcagg 323
Query: 124 tggaacaaattatatccctccccatttctgctccagacctcccatggcttatctcactca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggaacaaattatatccctccccatttctgctccagacctcccatggcttatctcactca 383
Query: 184 gagcaaacccaagtcttcatacagcttcctatggtatctagactccaaacaggggcccag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagcaaacccaagtcttcatacagcttcctatggtatctagactccaaacaggggcccag 443
Query: 244 aaataaccattcttggcctaccacatttctatacagcccaaagggttaaccaaattttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaataaccattcttggcctaccacatttctatacagcccaaagggttaaccaaattttta 503
Query: 304 gttttaggtcattaaaaaataatgcaaatgcagaaaatcttgtaatacgtgaaaactcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttttaggtcattaaaaaataatgcaaatgcagaaaatcttgtaatacgtgaaaactcta 563
Query: 364 tcaagtcccaaggctggtatccaggaacgagctctactgaacagaagcaagctatggcta 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 tcaagtcccaaggctggtatccaggaacgagctctactgaacagaaccaagctatggcta 623
Query: 424 cactaagttttcggcacatgaagtttaaggattcactccagctctttacagaggatgtag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cactaagttttcggcacatgaagtttaaggattcactccagctctttacagaggatgtag 683
Query: 484 atccctgccctaaagtatctgct 506
|||||||||||||||||||||||
Sbjct: 684 atccctgccctaaagtatctgct 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_j04.g1 MSMg01no078_j04.g1 CHROMAT_FILE:
MSMg01no078_j04.g1 PHD_FILE: MSMg01no078_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:56 2005
(305 letters)
>mm_chr12_31758722_31759426
Length = 705
Score = 590 bits (305), Expect = e-173
Identities = 305/305 (100%)
Strand = Plus / Minus
Query: 1 acatttctgccgatagatgaccaacgaatcaggtctcagaggctttcgagcgatagccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatttctgccgatagatgaccaacgaatcaggtctcagaggctttcgagcgatagccct 446
Query: 61 gcgtgctacaggagctggggcaagagccgaagggatcgggttgcggtgctgcacccctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcgtgctacaggagctggggcaagagccgaagggatcgggttgcggtgctgcacccctgg 386
Query: 121 ggcctcagggaccctgtgttcagatacaggaccccggctagatcccagcgtgctgcgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcctcagggaccctgtgttcagatacaggaccccggctagatcccagcgtgctgcgaac 326
Query: 181 atacttggcgcggtccgctgccagtctctccacagcgctcttgttcgctggccgcggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacttggcgcggtccgctgccagtctctccacagcgctcttgttcgctggccgcggggt 266
Query: 241 gagagtgtcctccgctgccctggggtccccgagaggtggccgcattctagcaagcgagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagagtgtcctccgctgccctggggtccccgagaggtggccgcattctagcaagcgagtc 206
Query: 301 caggg 305
|||||
Sbjct: 205 caggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
