BAC Information

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BAC

Clone NameMSMg01-078K23
Chromosome12 (Build37)
Map Location 77,381,450 - 77,530,207
singlet/doubletdoublet
Overlap geneMthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21
Downstream geneLOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K23.T7 (MSMg01no078_k23.b1)MSMg01-078K23.TJ (MSMg01no078_k23.g1)
ACCAG299961AG299962
length707709
length of high quality
(start - end)
467 (43 - 509)251 (77 - 327)
definitionCHROMAT_FILE: MSMg01no078_k23.b1 PHD_FILE: MSMg01no078_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:05 2005CHROMAT_FILE: MSMg01no078_k23.g1 PHD_FILE: MSMg01no078_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,529,744 - 77,530,207)(77,381,450 - 77,381,700)
sequence
CATAATTTGCGGCGCTAAACGACTCCTATAGCCAGAGAACGCGCGGAATT
CCTGTGTGATCTGCTCAGTGAGCTTTAAAACAAAGCAAATTCTCCTGTGT
AAAATGTTTCCTAGACGCCGGGCAGTGGTGGTGCACGCCAGCACTTGGGA
GGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGT
GAGTTCCAGGACAGCCAGGGCTATACAGAGAAATTCCTAGACCAGAAAAC
TTTCCAGCATGCCACCACCCCCTCAGCCTAAGTGAGGCTGCCAGTAATAA
ACCTCCCAAGCATGCTATGAAACCTTACTCACACCACGCGGCTTTGGGGA
TTCTTCTCCATCGAGAGTCTCTGCAGGTAATAAGACAGATAGTACAACAG
CGCCATGAGGAAGCTGCCAAGATTCTTATTCCTACGGGGAAATTGAAGAA
AAAAGACCAAGAACCAACATCGGCATTCTCATGAAGAACAAAGGGACGCT
GTATGAGAATAAATAGAAATATACAATTCTAAGTCTAAGAAATATATAAT
TCCAATTACACAGTTAGCTTACTACCCATTGTGCTAGAGATGTTAAAAGC
GCTTGATAAAAGACTCATTCCTGGATAGTAAGATACCCCCTTATTAACGC
ATTGTTAGTTATTTCACTTCACAAGTATTCGTTCTTTAAGTGACTTATTT
TCATTGT
CTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTAACACTGAGGCAGTCATCAA
TGCCATTGCACCCGAGAAGGATGTGGATGGGTGAGTGCTCCCCATTGGCT
TTATTTAGAGCATGATTCTATTCTGGAAGCATAGTGTGTTTGTTTCTAGA
GGACAGAGGCTCCACTCCTTCCTCCTAATTTGACTGTTTTAGGTTGACGA
GCGTCAGTGCTGGGAAGCTCGCCAGAGGTGATCTAAATGACTGCTTCATC
CCATGCACACCCAAGGGATGCTTGGAATTCATCACAGAGGTAGGTAAGAG
TGAGGGAAACCAGCAGGAAAATCGTGAAGACTCGCCTCTGCCTGCCAAAC
CCTGGGACTGCAGGTGTTTTCACAAGTACACTGGCTCTGCGCCGATTTCC
TTAGCTGTTAGTTAAACTTAACTACAGCATGTGCACTCCACGGGGCTGGA
CAGACAGTGCAGCATTTTCTTGAGCTTCTTTGTGAATCAGGACCACTACG
ACCCACTTCCTCTGTATTGCCATGTATCTAGAAAGCTCTTTCTTAGGAAG
CTTTGCCTTCCTGTTGGCTTCCAGACAACTTGCCTCAACACCAAGGATTC
CGCCCCCTGCACTGCTAGCATATAGAATCCAACCAACAGACCAGATAGAG
TTGTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k23.b1 MSMg01no078_k23.b1 CHROMAT_FILE:
MSMg01no078_k23.b1 PHD_FILE: MSMg01no078_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:05 2005
         (467 letters)



>mm_chr12_77529350_77530216
          Length = 867

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcctgtgtgatctgctcagtgagctttaaaacaaagcaaattctcctgtgtaaaat 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcctgtgtgaactgctcagtgagctttaaaacaaagcaaattctcctgtgtaaaat 799

                                                                       
Query: 64  gtttcctagacgccgggcagtggtggtgcacgccagcacttgggaggcagaggcaggcgg 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtttcctagacgctgggcagtggtggtgcacgccagcacttgggaggcagaggcaggcgg 739

                                                                       
Query: 124 atttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctata 679

                                                                       
Query: 184 cagagaaattcctagaccagaaaactttccagcatgccaccaccccctcagcctaagtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cagagaaattcctagaccagaaaactttccagcatgccaccaccccctcagcctaagtga 619

                                                                       
Query: 244 ggctgccagtaataaacctcccaagcatgctatgaaaccttactcacaccacgcggcttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggctgccagtaataaacctcccaagcatgctatgaaaccttactcacaccacgcggcttt 559

                                                                       
Query: 304 ggggattcttctccatcgagagtctctgcaggtaataagacagatagtacaacagcgcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggggattcttctccatcgagagtctctgcaggtaataagacagatagtacaacagcgcca 499

                                                                       
Query: 364 tgaggaagctgccaagattcttattcctacggggaaattgaagaaaaaagaccaagaacc 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgaggaagctgtcaagattcttattcctacggggaaattgaagaaaaaagaccaagaacc 439

                                                       
Query: 424 aacatcggcattctcatgaagaacaaagggacgctgtatgagaa 467
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 438 aacatcggcattctcatgaagaacaaagggacgctgtttgagaa 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no078_k23.g1 MSMg01no078_k23.g1 CHROMAT_FILE:
MSMg01no078_k23.g1 PHD_FILE: MSMg01no078_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:05 2005
         (251 letters)



>mm_chr12_77381250_77381900
          Length = 651

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaacactgaggcagtcatcaatgccattgcacccgagaaggatgtggatgggtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattaacactgaggcagtcatcaatgccattgcacccgagaaggatgtggatgggtgagt 260

                                                                       
Query: 61  gctccccattggctttatttagagcatgattctattctggaagcatagtgtgtttgtttc 120
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gctccccgttggctttatttagagcatgattctattctggaagcatagcgtgtttgtttc 320

                                                                       
Query: 121 tagaggacagaggctccactccttcctcctaatttgactgttttaggttgacgagcgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaggacagaggctccactccttcctcctaatttgactgttttaggttgacgagcgtca 380

                                                                       
Query: 181 gtgctgggaagctcgccagaggtgatctaaatgactgcttcatcccatgcacacccaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctgggaagctcgccagaggtgatctaaatgactgcttcatcccatgcacacccaagg 440

                      
Query: 241 gatgcttggaa 251
           |||||||||||
Sbjct: 441 gatgcttggaa 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)