BAC Information

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BAC

Clone NameMSMg01-079F10
Chromosome12 (Build37)
Map Location 14,880,140 - 14,880,494
singlet/doubletsinglet
Overlap genenone
Upstream geneAW125753, LOC100043256, Map1lc3-ps7
Downstream geneLOC668492, LOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F10.T7 (MSMg01no079_f10.b1)MSMg01-079F10.TJ (MSMg01no079_f10.g1)
ACCAG300441AG300442
length707711
length of high quality
(start - end)
606 (42 - 647)564 (69 - 632)
definitionCHROMAT_FILE: MSMg01no079_f10.b1 PHD_FILE: MSMg01no079_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:56 2005CHROMAT_FILE: MSMg01no079_f10.g1 PHD_FILE: MSMg01no079_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTTTAGCTCCTACTCCAGTTTTTTTAATTGGTTTATTTGATTTTTGGA
GTCTAATTTCTTGAGTTCCTTATATATTTTGGATATTAGATTTCAATTGG
ATGTAGGGTTAGTGAAGACCTTTTCCCAATCTATAGGTTGCCATTTTGTC
CTATGATAGTGTCCTTTGCCTTACAGAAGCTTTTCAGCCTTATGAAGTCC
CATTTGTCAATTGTTGATCTTAGAGCCTGGGCCATTGGTGTTCTGTTCAG
AAAATTTCCCCCTTTGCCAATTCATTTGAGGCTATTTCTCACTTTCTCTT
CTATTAGATTCAGCATATCTTGTTTTATATTAAGTTTTTTTGATCCACTT
GAACTTGAGCTTTTTACAAACTAATAAATAAGGATCGATTTCCTTTATTT
TACATGCAGACCAACAGTTAGACCAGCACCATTTGCTGAAGATGCTGTCT
TTTTATCACTGTATGGTTTGTGATCATGAAATTCTGTGGCGCTACCACAC
AGTAGACTGATCATAGATAAAAGCAATGTTCTACTTATTTCAAAATGCTA
AATGGAGAGAGACTAGACATTCTGAAATAAGTGTGTATGCATGTGTGTGT
GTGTGTGCGTGTGTGTGTGTGAGTTTCTTGCCCATCCACCCTTGTATGGA
GGTCAGA
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAATGTTTTTATTATTAAAACAAGAAAGATAT
TAAAAGCTTCAAAATTCAAGTGGAATTTAGAACACAAGCTAATGAATGAT
TCTTGTGATAGATTCTTCCCAAGGAATAACAGAGTCTGTGACTATTTTCT
GTCCAATAAATACTTTGATTAAGATATTTAAAAATTTTTATTTTGGATCA
TATTGTCATATTTTTAAAAACTATTATCAGATTTAAATATATAAAATTAT
TTACCCGTTTGGAAAATAAGTATCAGGTGTGTTCATGTACTTACATACAC
ATGTGTTCAAGTGTATCTAAATCTAACACAAACATGTGTATATGTACCTA
CACACACACACACACACACACACACAAGCCTTTGAAACCCCTCTGGCAAC
AATAATAATAAAAAAATTAAGAATCAACATATAATTTAAATTCCACTACT
GCTGTTATTGTAGTTAAGCTGGTAAACATGTTTTAGTCTCAGATAAACAT
CAATTATTTGGATTATTAGGTTTTTTTCCCAGAAAATATAGTGTTCATGG
GGCCAGTAAAGAGCATGCACAACCTTTTACTGTCAAGTCAATCAAATTTG
TCACTTTTCTATGGATCAAGTTGATAAAGATTACTAAAGAGAACAATCAG
ATTCAGAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f10.g1 MSMg01no079_f10.g1 CHROMAT_FILE:
MSMg01no079_f10.g1 PHD_FILE: MSMg01no079_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:56 2005
         (564 letters)



>mm_chr12_14880140_14881103
          Length = 964

 Score =  687 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgtttttattattaaaacaagaaagatattaaaagcttcaaaattcaagtggaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caatgtttttattattaaaacaagaaagatattaaaagcttcaaaattcaagtggaattt 296

                                                                       
Query: 61  agaacacaagctaatgaatgattcttgtgatagattcttcccaaggaataacagagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agaacacaagctaatgaatgattcttgtgatagattcttcccaaggaataacagagtctg 236

                                                                       
Query: 121 tgactattttctgtccaataaatactttgattaagatatttaaaaatttttattttggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgactattttctgtccaataaatactttgattaagatatttaaaaatttttattttggat 176

                                                                       
Query: 181 catattgtcatatttttaaaaactattatcagatttaaatatataaaattatttacccgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 catattgtcatatttttaaaaactattatcagatttaaatatataaaattatttacccgt 116

                                                                       
Query: 241 ttggaaaataagtatcaggtgtgttcatgtacttacatacacatgtgttcaagtgtatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttggaaaataagtatcaggtgtgttcatgtacttacatacacatgtgttcaagtgtatct 56

                                                                  
Query: 301 aaatctaacacaaacatgtgtatatgtacctacacacacacacacacacacacac 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  aaatctaacacaaacatgtgtatatgtacctacacacacacacacacacacacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)