CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATAAAGGTTTTTAGGTAAAGATAGATTATTGGAAGTAATGTTT
ATAGTTGTAGGATGGAGTGTGAAATTACAAACTCCTGCTGTACTGTGAAT
TAGTGTGGTGCTGTACTGTGAATTAGTGTGGCTCTGTACTGTGAATTAGT
GTGGCTCTGTACTAGCCCACTGACCCATTGGGGCTCCCTGACTAGTAAGG
GTCTTTTGCTTCCCCTGAAGCCCAGTTGAAGAGACATTCTCAGAATGCTT
CCTTATGGCCACCAAGGTCATCATTTTCTGAATTGTATCTTCTCTTTTCC
TGACCTTGATTATGCTGACTGACTCTCCCTTCAGTAAAACTTTGTATCAT
TCAATGTTTTGTAAATTTAAGTAACAAAATAGATTTTTTTTAGAGTCAAG
TGATGATATTTTATAAATTAAAAGTAATTTCCTAGTTTGGTTTTGCTTTT
TCTTACAATTTTAAATATGTGCGCCAGGCGTGGTGGCGCACACCTTTAAT
CCCAGCACTCCTGAGGCAGAGGCGGTCGGACTTCTGAGTTCGAATCCTGT
CTGTTCTACAAAGTAAGTTCCCGGACAGCCCGGGCTGTACAGTATAACCC
CTAATCTCGAAAAAATAAACCAACCCATAAACAAAAAAAAAATGC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTATACTGGGGCATAGAACCTTCAC
AGGACCAAGGGCCTCTCCTCCCATTGATGTCCAACTAGGCCATCCTCTGC
TACATATGCAGCTAGAGCCTTGGCATAATTTAGACTTAATAGAACTCTAC
TGTTAAGCAACAGTTCTGTTTCCCTGCTAAGCATTCTGGGTTTCCGTCAT
ACACATACTGTGATGCTGCAACAATTCCTTCCCAACAGAAGCAGGCCTGT
GCTTGTCAGTGCCCACAAAGAAAGGACTCTTTTATTCTGCTCACTTCCTT
CTTAGAGGAAAGGCCTTCACTCAACTGTGACAAGCAACCCCATCCCCAAA
GCAGTTTTGCGTCTAAGTGGTGGTAGTGTGTGTTATTAGTGGTAGTAGAC
AAAGTAGAGAACCAGGCTGTGAGGGCAACAGTGGCCTGCAATGCTCAGCT
TTCCTAACTGAAGATTTTTGGGGGAGGGGGTTTGGCGTNTNCCCNCCCNC
NCCCCCCCCCCCCTCCCCCCCNCCCCCCCCCCCCTCTTCTCCCCTCCCCC
CCCCCCCCCCCCCTTTTTCTTCCCTTTTCCTCTTCGTCCTCCCCCTTCCC
TCCCTTCCTCCCCTCTCCCCCTTTTTCCCTTTTCTTCTCCTC

Query= MSMg01no079_n01.b1 MSMg01no079_n01.b1 CHROMAT_FILE:
MSMg01no079_n01.b1 PHD_FILE: MSMg01no079_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:32 2005
         (489 letters)



>mm_chr12_35765397_35766285
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataaaggtttttaggtaaagatagattattggaagtaatgtttatagttgtag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataaaggtttttaggtaaagatagattattggaagtaatgtttatagttgtag 264

                                                                       
Query: 65  gatggagtgtgaaattacaaactcctgctgtactgtgaattagtgtggtgctgtactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatggagtgtgaaattacaaactcctgctgtactgtgaattagtgtggtgctgtactgtg 324

                                                                       
Query: 125 aattagtgtggctctgtactgtgaattagtgtggctctgtactagcccactgacccattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattagtgtggctctgtactgtgaattagtgtggctctgtactagcccactgacccattg 384

                                                                       
Query: 185 gggctccctgactagtaagggtcttttgcttcccctgaagcccagttgaagagacattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggctccctgactagtaagggtcttttgcttcccctgaagcccagttgaagagacattct 444

                                                                       
Query: 245 cagaatgcttccttatggccaccaaggtcatcattttctgaattgtatcttctcttttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaatgcttccttatggccaccaaggtcatcattttctgaattgtatcttctcttttcc 504

                                                                       
Query: 305 tgaccttgattatgctgactgactctcccttcagtaaaactttgtatcattcaatgtttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaccttgattatgctgactgactctcccttcagtaaaactttgtatcattcaatgtttt 564

                                                                       
Query: 365 gtaaatttaagtaacaaaatagattttttttagagtcaagtgatgatattttataaatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtaaatttaagtaacaaaatagattttttttagagtcaagtgatgatattttataaatta 624

                                                                       
Query: 425 aaagtaatttcctagtttggttttgctttttcttacaattttaaatatgtgcgccaggcg 484
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 625 aaaataatttcctagtttggttttgctttttcttaaaattttaaatatgtgagccaggcg 684

                
Query: 485 tggtg 489
           |||||
Sbjct: 685 tggtg 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_n01.g1 MSMg01no079_n01.g1 CHROMAT_FILE:
MSMg01no079_n01.g1 PHD_FILE: MSMg01no079_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:33 2005
         (466 letters)



>mm_chr12_35894623_35895488
          Length = 866

 Score =  818 bits (423), Expect = 0.0
 Identities = 447/455 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctatactggggcatagaaccttcacaggaccaagggcctctcctcccattgatgtcca 60
           |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 754 ccctatcctggggcatagaaccttcataggaccaagggcctctcctcccattgatgacca 695

                                                                       
Query: 61  actaggccatcctctgctacatatgcagctagagccttggcataatttagacttaataga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 694 actaggccatcctctgctacatatgcagctagagccttggcataatttagacttaacaga 635

                                                                       
Query: 121 actctactgttaagcaacagttctgtttccctgctaagcattctgggtttccgtcataca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 634 actctactgttaagcaacagttctgtttccctgctaagcattatgggtttccgtcataca 575

                                                                       
Query: 181 catactgtgatgctgcaacaattccttcccaacagaagcaggcctgtgcttgtcagtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 catactgtgatgctgcaacaattccttcccaacagaagcaggcctgtgcttgtcagtgcc 515

                                                                       
Query: 241 cacaaagaaaggactcttttattctgctcacttccttcttagaggaaaggccttcactca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cacaaacaaaggactcttttattctgctcacttccttcttagaggaaaggccttcactca 455

                                                                       
Query: 301 actgtgacaagcaaccccatccccaaagcagttttgcgtctaagtggtggtagtgtgtgt 360
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 454 actgtgacaagcaaccccatccccaaagcagttttgagtctaagtggtggtagtatgtgt 395

                                                                       
Query: 361 tattagtggtagtagacaaagtagagaaccaggctgtgagggcaacagtggcctgcaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tattagtggtagtagacaaagtagagaaccaggctgtgagggcaacagtggcctgcaatg 335

                                              
Query: 421 ctcagctttcctaactgaagatttttgggggaggg 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 334 ctcagctttcctaactgaagatttttgggggaggg 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)