BAC Information

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BAC

Clone NameMSMg01-079N18
Chromosome12 (Build37)
Map Location 83,723,611 - 83,723,916
singlet/doubletsinglet
Overlap geneRgs6
Upstream geneTtc9, LOC100041821, Map3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079N18.T7 (MSMg01no079_n18.b1)MSMg01-079N18.TJ (MSMg01no079_n18.g1)
ACCAG300840AG300841
length754732
length of high quality
(start - end)
139 (64 - 202)302 (68 - 369)
definitionCHROMAT_FILE: MSMg01no079_n18.b1 PHD_FILE: MSMg01no079_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:36 2005CHROMAT_FILE: MSMg01no079_n18.g1 PHD_FILE: MSMg01no079_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCTCATTCGGGAATGAGCTTGTGTGAATGAGGACCTGGATTCCATCCC
CAGCACTCAGAAAGCTGGCGGAGGTGCCTCAAGTCTATAACCTCAGTGCT
GGGGAGTGGGGACAGAGATGAGATGGGGGAGGGGATTTCTGGAGCTCACT
GGCTAGCCAGTCTATGGTTCATTTCTATTTTACCATTCTTACGTATCATA
TCTCTACTTTACAGGAATTATCTCTAGATAGTGTAGCCTTCACAGTGAAT
TTTCTTAACTACAGTAGAATCTGTTTGTGTGTCTGTCTTCCTTTCCTTCC
TCTCTTCCTCTTCTCTCTTTCTCCTCCCTCTCTTCCTTTCCTTTCTCCCC
CTTCTCCTTTTGTGCGCCCCCCCCCATTTTTTTCCCTCCATCTTTCCTTG
TCCCCTTCCTTCTTTCTCTTCTCTCCCTTCCCTTCTTTCTTCTCTCCCTT
TCTCTTTTCCTTTTTCTTCCTTCCTTCCCTCTCCCCTCTCCCCTCTCTCT
TTCCTCTCCTCTCCTCCTTTACTTCTTTTTCCTCCTTTTTCTTTTTTCTC
TTTTCCCCTTCTCCCTTCTTTCTCTCTCCTCCTTTCCTCCTTCCTCTTTC
CTCCTTCTTCTTTCCCCTTTCCTCCTCCTCCCCCTCTCCTCTTTCCCTCC
TTTCCTCCCTACCCTGCCTTATTCCTTTTCTCCTCCCTCTCCTTCCCTTC
CTCN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAACACTACATCACACTGATTCAGGAGACCTCA
TCTCAGCAGGCTTTGTGAATGGTTTCCCTTTAACAAGGACACAGCCTCAG
AGGAAATCAAGTACTAGAGAGTAAGAGAATGCTTCCAAGGCTCAACTCAA
AGGTGGCTTTCTCTTTGATGGCTTTACCAGACTATCTAGAAAAGTCAAGC
TGTCTAAACAAACTAATTTTAATAACTGCAGATAAAAGACCAATTCATTT
GTCCATTCAAGTATTTATGATTTTTTTAACTTCTATTTGATTGTGTGTGT
GTGGGGGGGTATATGTTTGCGCTATTTCCCCTTTTTTTCTTTTTCTCCCT
CCCCGATCTCCCCCCCCGTTTGCCTCCACTACCATCTTATTTACTTCTCC
CTGCTCTCTTTTCTTCTCCCTCATTCCCCAATTCTCTCATAACATCATCC
TTCTCATCGCTCTTCCCTACCCCTCTCGTTCCCTCCTCCTCTCGCCTCCT
CTTGCATTTCATCCTTCTTCCACCAACCCCTCTTCCTCCCACTCTCTCTC
ATTATACCGCTCTCATTGCTTTCTGCTCTTGCTATCTATGGACTACTGGG
CATTTCTACGCTGTCGTTGTTCTTTTACTTTTCTTCTTACACCACTCTCT
CCTTCCGCCTTCCTCCTCTTTTTCCCCTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_n18.g1 MSMg01no079_n18.g1 CHROMAT_FILE:
MSMg01no079_n18.g1 PHD_FILE: MSMg01no079_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:36 2005
         (302 letters)



>mm_chr12_83723425_83724126
          Length = 702

 Score =  557 bits (288), Expect = e-163
 Identities = 300/306 (98%), Gaps = 4/306 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacactacatcacactgattcaggagacctcatctcagcaggctttgtgaatggtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caacactacatcacactgattcaggagacctcatctcagcaggctttgtgaatggtttcc 433

                                                                       
Query: 61  ctttaacaaggacacagcctcagaggaaatcaagtactagagagtaagagaatgcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctttaacaaggacacagcctcagaggaaatcaagtactagagagtaagagaatgcttcca 373

                                                                       
Query: 121 aggctcaactcaaaggtggctttctctttgatggctttaccagactatctagaaaagtca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggctcaactcaaaggtggctgtctctttgatggctttaccagactatctagaaaagtca 313

                                                                       
Query: 181 agctgtctaaacaaactaattttaataactgcagataaaagaccaattcatttgtccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agctgtctaaacaaactaattttaataactgcagataaaagaccaattcatttgtccatt 253

                                                                       
Query: 241 caagtatttatgatttttttaacttctatttgattgtgtgtgtgtggggggg----tata 296
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||    ||||
Sbjct: 252 caagtatttatgatttttttaacttctatttgattgtgtgtatgtgggggggggggtata 193

                 
Query: 297 tgtttg 302
           ||||||
Sbjct: 192 tgtttg 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)