BAC Information

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BAC

Clone NameMSMg01-080F15
Chromosome12 (Build37)
Map Location 69,092,435 - 69,092,972
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681, LOC100040696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F15.T7 (MSMg01no080_f15.b1)MSMg01-080F15.TJ (MSMg01no080_f15.g1)
ACCAG301216AG301217
length702700
length of high quality
(start - end)
555 (65 - 619)539 (69 - 607)
definitionCHROMAT_FILE: MSMg01no080_f15.b1 PHD_FILE: MSMg01no080_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:14 2005CHROMAT_FILE: MSMg01no080_f15.g1 PHD_FILE: MSMg01no080_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGCCTATACCCTAGACTGCCCATAGTGGGCATGGGCCTCATGTCAATCAT
TAATAAATAAAATGACCCACAGACTTGCTACAGGACAATCTGAAGGAGGA
TTATTTTTTTCTATTAATTTATTTACTAATCCACTTTATATTCTAATCTC
AAACCCCACCTCTCTTCTCAAACTCAACAGCCCCTCCTCCCATCCCTTCT
CTCTTTCTCCTCTGAGAAGGGGAGGACCTCCCGAGTACCAATCCATCTTA
ACAACTCCAGTCACTGCAGAACTAGCCACGCACATCTTCCAATGAGGCCA
GTTAGGGAAACAGGATTGACAGGCAGGCAACAGTCAAAGTATGTCCAGAG
TTAGGGCACTGCATGAAGATGAAGCTGCAGATCTGCTAAAATTTGTACAG
AGAGCCTAGGTCCAGCCCATGTATGCTCTTTGGTTGGTGGTTCAGGCTCT
GGGAGCTCCTACGTGTTCACACTAGTTGACTCTGTCTTCTTGTGGAGTCC
TTGTCTCCTGGTTCCTCAATCCTTTCTCCCAACTCTTCCATAAGACTTTC
TGAGCTCTGTCTAATGTGGGGCTGTGTATCTTCTGCACCTTTTTTTCCCT
CAGGTACTGTCTGAAGCCTCTCAGAGAACAGTTATGCTAGGCTCCTGTCT
AN
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGTATCCCAAGATCTTAAAAGCACGGGTTC
ACTATTCTCTTGCTGTCCACACACCATGATTCACAAACTTTTGTACACTG
CTTTCTTTTGAACTTTCTAATTTCTAGCTCCTGAGTGTGTTAGAATTATG
GTAATTTCATCTACCTGAAACATGTAATAGCAAAATAGGCTGATTGTTTA
TGCATCATTGAATTGTGTATAATACATCTGAGTAATAACATTTAAGTTAA
ATTTTAGTACTATATAAAACTCAAAGACATGATAAACCATGTTATTACCT
GAATTTTATCCAATTTTTATTTCCCTGTTTTCATATTTTACTGAAATACT
TTCATATTTATCTTTTCATCCTTCTGCCCTACTCCAAATAAATTAGTAAA
TCCAAGTTGAATTGGTTAATAACAACCAAAGAGGAATGCATGAGAACAAA
ACGTTAATAAAAGGCCAACCCTCCCTTTAGGTTATTCAAAGAAGTTGATG
TACAGAGGAAATGGAAAGTTAACTGTATACTGAATGTCATACTAATCATG
TCTGTAGCTTTTGCTAGCTGCCCATGTTACTGGCGAGCGGCATATGTGAT
GGATATGTAGCGCTATGTGTAAACAGCAAGCATCTCATTGTCTTACACTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f15.g1 MSMg01no080_f15.g1 CHROMAT_FILE:
MSMg01no080_f15.g1 PHD_FILE: MSMg01no080_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:14 2005
         (539 letters)



>mm_chr12_69092235_69093172
          Length = 938

 Score = 1004 bits (519), Expect = 0.0
 Identities = 534/539 (99%), Gaps = 1/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtatcccaagatcttaaaagcacgggttcactattctcttgctgtccacacaccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgtgtatcccaagatcttaaaagcacgggttcactattctcttgctgtccacacaccatg 679

                                                                       
Query: 61  attcacaaacttttgtacactgctttcttttgaactttctaatttctagctcctgagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 attcacaaacttttgtacactgctttcttttgaactttctaatttctagctcctgagtgt 619

                                                                       
Query: 121 gttagaattatggtaatttcatctacctgaaacatgtaatagcaaaataggctgattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gttagaattatggtaatttcatctacctgaaacatgtaatagcaaaataggctgattgtt 559

                                                                       
Query: 181 tatgcatcattgaattgtgtataatacatctgagtaataacatttaagttaaattttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatgcatcattgaattgtgtataatacatctgagtaataacatttaagttaaattttagt 499

                                                                       
Query: 241 actatataaaactcaaagacatgataaaccatgttattacctgaattttatccaattttt 300
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 actgtataaaactcaaagacatgataaaccatgttattacctgaattttatcca-ttttt 440

                                                                       
Query: 301 atttccctgttttcatattttactgaaatactttcatatttatcttttcatccttctgcc 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 439 atttccctgttttcatattttactgaaatattttcatatttatcttttcatccttctgcc 380

                                                                       
Query: 361 ctactccaaataaattagtaaatccaagttgaattggttaataacaaccaaagaggaatg 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 ctactccaaataaattagtaaatccaagttgaattggttattaacaaccaaagaggaatg 320

                                                                       
Query: 421 catgagaacaaaacgttaataaaaggccaaccctccctttaggttattcaaagaagttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 catgagaacaaaacgttaataaaaggccaaccctccctttaggttattcaaagtagttga 260

                                                                      
Query: 481 tgtacagaggaaatggaaagttaactgtatactgaatgtcatactaatcatgtctgtag 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtacagaggaaatggaaagttaactgtatactgaatgtcatactaatcatgtctgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)