Query= MSMg01no080_n04.b1 MSMg01no080_n04.b1 CHROMAT_FILE:
MSMg01no080_n04.b1 PHD_FILE: MSMg01no080_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:50 2005
(490 letters)
>mm_chr12_61885812_61886701
Length = 890
Score = 859 bits (444), Expect = 0.0
Identities = 475/486 (97%), Gaps = 2/486 (0%)
Strand = Plus / Plus
Query: 5 gaattcttctataccctttgaatacacattttctatttttagataaattcagatacataa 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttctataccctttgaatagacattttctatttttagataaattcagatacataa 262
Query: 65 atgtcacttgattacattcctcaggatgttgtgcaggctccttgcttaggagtaattagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtcacttgattacattcctcaggatgttgtgcaggctccttgcttaggagtaattagc 322
Query: 125 tgtaaattttaagttcatactgactacacataccatttaaagttttggaagtattcagaa 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 tgtaaattttaagttcatactgactacacataacatttaaagttttggaagtattcagaa 382
Query: 185 tggcatgcacacagtgcctggtttcctgatgttgcattgcttataacatacgcctgttct 244
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 383 tggcatgcacacagtgcctgttttcctgatgttgcattgcttagaacatacacctgttct 442
Query: 245 taagggaaaagtaatttaatatgaaattctaactccagca--gtttcctttacaatgctg 302
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 443 taagggaaaagtaatttaatatgaaattctaactccagcactgtttcctttacaatgttg 502
Query: 303 tcctaaaataactagagtattcaagtgtcgacttcatgcaacgtgacgataaatatttta 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 tcctaaaataactagagtattcaagtgtcgacttcatgcaacgtgacgataaatatttaa 562
Query: 363 aaatatttcataatttgctgccaaaaacatgacctgatgggttcttactagaattaattc 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatatttcagaatttgctgccaaaaacatgacctgatgggttcttactagaattaattc 622
Query: 423 tggaatcatgcttcctcgatatgagtctttccctccaaagtcctgctgttttaagccatc 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 tggaatcatgcttcctcgatatgagtctttctctccaaagtcctgctgttttaagccatc 682
Query: 483 tgccac 488
||||||
Sbjct: 683 tgccac 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_n04.g1 MSMg01no080_n04.g1 CHROMAT_FILE:
MSMg01no080_n04.g1 PHD_FILE: MSMg01no080_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:51 2005
(307 letters)
>mm_chr12_62022323_62023029
Length = 707
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Minus
Query: 1 actaaggagtgaccctgtcccataccagaagggaactcaaagaacgtaaggaggtaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actaaggagtgaccctgtcccataccagaagggaactcaaagaacgtaaggaggtaattt 448
Query: 61 tgaaaaccaaaataaaatattttatgggaactgtaaaagcttattttagcaaagcaacac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 447 tgaaaaccaaaataaaatattttatgggaactgtaaaagcttattttagcaaagcagcac 388
Query: 121 actactaaaaggaaggagaaagaaagatgctctaacccaaagttctttttctgtcctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actactaaaaggaaggagaaagaaagatgctctaacccaaagttctttttctgtcctata 328
Query: 181 ttttaccaactctgtcttgatttgaacatttttgtcacctaactttaaccagaatccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttttaccaactctgtcttgatttgaacatttttgtcacctaactttaaccagaatccttc 268
Query: 241 taattctgaaagactagtgagggctccaggctaagatcacagccttcatggccataataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 267 taattctgaaagactagtgagggctccaggctaagatcacagccttcatggtcataataa 208
Query: 301 gctacag 307
|||||||
Sbjct: 207 gctacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
