BAC Information

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BAC

Clone NameMSMg01-080P02
Chromosome12 (Build37)
Map Location 62,992,901 - 62,993,315
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
Downstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080P02.T7 (MSMg01no080_p02.b1)MSMg01-080P02.TJ (MSMg01no080_p02.g1)
ACCAG301660AG301661
length690699
length of high quality
(start - end)
496 (45 - 540)415 (74 - 488)
definitionCHROMAT_FILE: MSMg01no080_p02.b1 PHD_FILE: MSMg01no080_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:59 2005CHROMAT_FILE: MSMg01no080_p02.g1 PHD_FILE: MSMg01no080_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTGACAAACGGAGATTCCCTACAGATACTTAAAAGAACAGCCAA
GCTACACTCATATGCAAGAATTTATCAAGGTCTAGGAAATAGGGGGGTTG
TGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTG
CTAGCTTTCACAAGGCTCAAAGGAGTAGTACAAATTGTGACTAGGGTGTG
AAATCTTTACCTGCCATTAGCTGACCCTAGGCAGGGCTGTTTTATCTTTA
CTGTAAACATTACCTGGTTCCTGTAAGTCCTTTTGAAGTCATTCATTTGT
TTTGTGTCAGATAACTTCAATGTACGTTGCCTGCTGTGACATCCTACCCC
TTTGTTTTCTGTATTATATAAGACTGGTGTTTTGTGACAATACATTCAGA
TCCACACTTCCTTGTGTCACTTCAGTCCTTTTGTCACCCCCTTCTCACCA
ACTCTATGCCCATCCATCTGAGACCCTGATTCCCACGGATTGAGGGGTGC
TGGCTGGGACGGGTCCATGGCAGCTTTTATTTATTTATTCTCTTGATTGC
TCGTTTCCCTGCTTCTTTCCTTCCTTCCCCTAACTTTCTACCTTCTTCCC
TTTTTTCCCCCTCTTCCTTTCCTCCACCCCCGCACTTTTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTAAAGGAAGAACAATTTTGGATGCT
CAACTTTGTTAGGCATCACTAAACGCTTATTACTGGACACATTTGACTTC
TTTAGTAAGATGGATTTTCTTAAAAGAAGAGAATTTCTTTTATGAACAAA
AAATGCTGGCTGTTTTTCCTGTAATTCTTTAAGGGTTTTTTGTGTTTCCT
CTTTAAGGAGTTCTACCTGTTTAGCTGTGTTCTGTATTTCTTTAAGGGAG
TTATTACTGTCCTTCTTAAAAATCTCTACCAGCATCATGAGATATGATTT
TTAAATCCGAATCTTGCTTTTCCGGTGTGTTGGGGTATCCATGACTCGCT
GTGGTGGGTGTACTGGGTTCTGATGAGGCCGAGCAGTGTTGGCTTCAGGG
AGGGCATGGGGGATTTTTGGAGAGGAAACTAGGAAAGGGGATATCATTTG
AAATGTTAGTGAATAATTACATCTAATAATATAGAGAACGAGACAGATTA
ACTAATCCTATTTGAGTTTACCTGAACCAAACATAAAAATACTCAATTAG
AGCCGATCTTATTATACATACATACTATGCATAAATCAATAAATACCTAT
CCCGCTGGCCCTTTATAACCATAAACTTGAAGTATTAATATTTCAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_p02.g1 MSMg01no080_p02.g1 CHROMAT_FILE:
MSMg01no080_p02.g1 PHD_FILE: MSMg01no080_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:59 2005
         (415 letters)



>mm_chr12_62992701_62993515
          Length = 815

 Score =  764 bits (395), Expect = 0.0
 Identities = 410/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaaaggaagaacaattttggatgctcaactttgttaggcatcactaaacgcttattac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cctaaaggaagaacaattttggatgctcaactttgttaggcatcactaaaagcttattac 260

                                                                       
Query: 61  tggacacatttgacttctttagtaagatggattttcttaaaagaagagaatttcttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggacacatttgacttctttagtaagatggattttcttaaaagaagagaatttcttttat 320

                                                                       
Query: 121 gaacaaaaaatgctggctgtttttcctgtaattctttaagggttttttgtgtttcctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaaaaaatgctggctgtttttcctgtaattctttaagggttttttgtgtttcctctt 380

                                                                       
Query: 181 taaggagttctacctgtttagctgtgttctgtatttctttaagggagttattactgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggagttctacctgtttagctgtgttctgtatttctttaagggagttattactgtcct 440

                                                                       
Query: 241 tcttaaaaatctctaccagcatcatgagatatgatttttaaatccgaatcttgcttttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaaaaatctctaccagcatcatgagatatgatttttaaatccgaatcttgcttttcc 500

                                                                       
Query: 301 ggtgtgttggggtatccatgactcgctgtggtgggtgtactgggttctgatgaggccgag 360
           ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||
Sbjct: 501 ggtgtgttggggtatccatgactcaatgtggtggatgtactgggttctgatgaggccgag 560

                                                                  
Query: 361 cagtgttggcttcagggagggcatgggggatttttggagaggaaactaggaaagg 415
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgttggtttcagggagggcatgggggatttttggagaggaaactaggaaagg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)