BAC Information

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BAC

Clone NameMSMg01-081C16
Chromosome12 (Build37)
Map Location 59,646,573 - 59,647,047
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081C16.T7 (MSMg01no081_c16.b1)MSMg01-081C16.TJ (MSMg01no081_c16.g1)
ACCAG301832AG301833
length704702
length of high quality
(start - end)
472 (39 - 510)475 (64 - 538)
definitionCHROMAT_FILE: MSMg01no081_c16.b1 PHD_FILE: MSMg01no081_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:17 2005CHROMAT_FILE: MSMg01no081_c16.g1 PHD_FILE: MSMg01no081_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTACCACTGCAACCCATTTTTTAATGGGCTTATTTGAATTTCTGGAG
TTCAGCTTCTTCAGCTCTTTGTAAATATTGGCTATTAGTCCCCTATCAGA
TTTAGGATTGGTAAAAATCCTTTCCCAATATGTTGGTGGCCTTTTTGTGT
TATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCC
CATTTGTCTATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGCTTAG
GATTTTTTCCCCTGTGCCCATGTCTTCAAAGTTTCCCCCAACTTTCTCCT
CTATTAATTTCAGTGTCTCTGGATTTATGTGGAGGTCTTTGATCCACTTA
GACTTGAGCTTTGTACAAGGAGATAAGAATTGATCCATTCACATTCTTCT
ACATGTTAACTGCCACTTGTGCTAGCACCATTTGTTGAAAATGCTGTCTT
TGTTCCACTGGATGGTTTTAGCTCTCTTGTCAAATATCAAATGACCTTAC
GCGTGTGGGTTCATTTCTGGGCCTTCAATTCTATTCCATTGATCTACCTG
CCTATCACTGTACCAGTATCATGCAGCTTTTATCTACATTGCTCTGTAGT
ACCGCTTGACGTCATGCCTGTTGACCCCACCAGAGGCCCCTTCACTGCTG
ATAA
TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCTTTCCCACAAGCATGGCCACCATCCATGTTTAAG
TGGCAGCTATATTTGTCCAAAGCACTTCTGTTCTGAAGACATTTGTCACA
ACATGGTGAGCAAAGAAATTTGAAATACATATTTATGATGTGTTCCCCTT
GGACAGAGACCCTATGACTATGTGGTAGAAGAGCTCTCCCAAGGTTGGAT
AATGAAACTTTCTTGGTATAATAAAGAATTTAATCCAATGAGTTTGGGTT
ATTCTAAAGGGATATTTTGCTAGGTGATCTTCACCTAATTAGTTGAGTCC
ATCAGCACAAGACACAGTAACAGAAACAGTGACACCTGTTCCTCTAAAGA
AGTCGCTATTCATCGGAGTCACTGTTTATAGGGACAGGAGTTTCTAGCCT
CTAACCTTAGTACCTAGCTGTCTAGCCAGAACATGGGCACTGCCACCACT
CTGCTGTGAGGCAATTGCTGCCAACAGTTAATGAGCTTGGAATGAATCCA
AAGCCCCGGCTGAGATCACAGTCCATGCCAATATTTTTATTTTCAGATTA
AGGAGACCCAGAATAGATTTCCTGGTGAACTCACACCAGAATTCTACATA
CAGAAACTGAAGGTTCATAAATTTCATTCTTTCTTCTTTTTTTTCATTTT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_c16.g1 MSMg01no081_c16.g1 CHROMAT_FILE:
MSMg01no081_c16.g1 PHD_FILE: MSMg01no081_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:17 2005
         (475 letters)



>mm_chr12_59646373_59647247
          Length = 875

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttcccacaagcatggccaccatccatgtttaagtggcagctatatttgtccaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttcccacaagcatggccaccatccatgtttaagtggcagctatatttgtccaaagc 260

                                                                       
Query: 61  acttctgttctgaagacatttgtcacaacatggtgagcaaagaaatttgaaatacatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttctgttctgaagacatttgtcacaacatggtgagcaaagaaatttgaaatacatatt 320

                                                                       
Query: 121 tatgatgtgttccccttggacagagaccctatgactatgtggtagaagagctctcccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatgtgttccccttggacagagaccctatgactatgtggtagaagagctctcccaag 380

                                                                       
Query: 181 gttggataatgaaactttcttggtataataaagaatttaatccaatgagtttgggttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggataatgaaactttcttggtataataaagaatttaatccaatgagtttgggttatt 440

                                                                       
Query: 241 ctaaagggatattttgctaggtgatcttcacctaattagttgagtccatcagcacaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaagggatattttgctaggtgatcttcacctaattagttgagtccatcagcacaagac 500

                                                                       
Query: 301 acagtaacagaaacagtgacacctgttcctctaaagaagtcgctattcatcggagtcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtaacagaaacagtgacacctgttcctctaaagaagtcgctattcatcggagtcact 560

                                                                       
Query: 361 gtttatagggacaggagtttctagcctctaaccttagtacctagctgtctagccagaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttatagggacaggagtttctagcctctaaccttagtacctagctgtctagccagaaca 620

                                                                  
Query: 421 tgggcactgccaccactctgctgtgaggcaattgctgccaacagttaatgagctt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggcactgccaccactctgctgtgaggcaattgctgccaacagttaatgagctt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)