BAC Information

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BAC

Clone NameMSMg01-082F21
Chromosome12 (Build37)
Map Location 113,636,919 - 113,782,006
singlet/doubletdoublet
Overlap geneA730018C14Rik, A530016L24Rik, Tmem179
Upstream geneA230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
Downstream gene2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082F21.T7 (MSMg01no082_f21.b1)MSMg01-082F21.TJ (MSMg01no082_f21.g1)
ACCAG302753AG302754
length723719
length of high quality
(start - end)
248 (63 - 310)657 (63 - 719)
definitionCHROMAT_FILE: MSMg01no082_f21.b1 PHD_FILE: MSMg01no082_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:49 2005CHROMAT_FILE: MSMg01no082_f21.g1 PHD_FILE: MSMg01no082_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,636,919 - 113,637,164)(113,781,350 - 113,782,006)
sequence
GGCCGCTAAACGACTCACATTTTCGGAGCGGGGCGGAATTCTCACACAAT
TACAAACACATTCCAGGTCCGTGCAAGATGGGGCGGTGGCTGTGGCTTCG
GCGCTTCGAGGCGAGGCATCTGCCATGCGTGTTATGATCCAGGCGTCCAC
AGTGGTGAATGGGGTACAGGTCCCCCCTTCTCCAGGCAGCTTTCACTGCT
ATAGTCAGAGCTTTCCCCTGTAACCAGGGAGTCTGGGGTTCTAATTTTGG
GGTCCCATCCCATCTCCTTTCAGAAAGGGAACTCCTAGGCCACCTTCTTT
AGCCGCATTTGATGCGTTGCTCAGCCTGCCTTGAGCATACAGTGTTCAGT
CTGTGGCCACCTACTGTCTCTGGATGAACCACAGCTGGTAAAAGGGCTAG
GGGCGACCTCCAGGGTTAGTCATTATAATAGTTATTTTTGACAACGTTAT
AAAAGCTAGAGTCACTTGGGAAGAAGGACCCTCAGCTGAGGAATTGTCAT
CCATCAGACTAGCCTGTGGCTTTGTCATTGGGACATTCTCTTGATTGATG
ATTGGTGCTGGGGGGGGCAACCCCCTGTGGCTCGTGCCCTACCCTGTTCG
AATTTTGTCTCCCCAGATTGCTTCAGTAACCCCAATCTGGCCGCATCTGT
TTTTTTTTTTTCTTTCCCCTCCCAATTTTCTGCCTCCGTTTCCCGCCTTG
AATTTTCTTGCCTTTTTCTTCCC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCACTGGCGGGATTTTTGTGAAGAATGTCACTGGAAGCA
GACAGGGGTAGGGTGAGGGGTCACGTTAGCTGGTGGTAGCTAGTTCAGTA
GGAAGCTGATCTAGTCCTGACCCCTTTTGGAGACCAACAGGGACGCAGAA
GAGCCTGTGAGGTGGGTTGCTTTACATGAGGTGAGGGACCCTGGGGCCCA
TGGAGACTAAGGCTGGAGGTGCCTGTCCCTATGGTCAACCTGAGTCCATT
GAACCTGCTGCACCACCTGGCCTGGTGGACCACAGTCATCCGGAATGAGG
AGGGCACCTCAGAAATGACACTACTGAAGGGTGGTTCAAAGGGTTTCATG
GGAGATCAGATCTGGTTGGCTGAGGCCATCTTTGGTTCGCAAGGAACAGG
AAAGACAAGGCCAACACATGTCATCTCATGAATGGAACAGCCCCACTGAT
GTGACAGCATCTAAACTGGCAGATATAACTGGAACTGCAGAGGGCAGAAT
GTTGGGCTCTGTTCCCAACTCAGCTGACCAATTCATGTAACCCAGACCAG
GAGGGAAACCAGGCCAGGGTAGTGAATATTTGTGAACCTAATGCAGAGAT
TTGCAAACCCGGGCCTGGTCTCCTAACCGACATCTTTCTACCTGGGAGCA
CACTAGCCACAAGGGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_f21.b1 MSMg01no082_f21.b1 CHROMAT_FILE:
MSMg01no082_f21.b1 PHD_FILE: MSMg01no082_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:49 2005
         (248 letters)



>mm_chr12_113636719_113637366
          Length = 648

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggtccgtgcaagatggggcggtggctgtggcttcggcgcttcgaggcgaggcatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggtccgtgcaagatggggcggtggctgtggcttcggcgcttcgaggcgaggcatctg 260

                                                                       
Query: 61  ccatgcgtgttatgatccaggcgtccacagtggtgaatggggtacaggtccccccttctc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgcgtgttaagatccaggcgtccacagtggtgaatggggtacaggtccccccttctc 320

                                                                       
Query: 121 caggcagctttcactgctatagtcagagctttcccctgtaaccagggagtctggggttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcagctttcactgctatagtcagagctttcccctgtaaccagggagtctggggttct 380

                                                                       
Query: 181 aattttggggtcccatcccatctcctttcagaaagggaactcctaggccaccttctttag 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacttggggtcccatcccatctcctttcagaaagggaactcctaggccaccttctttag 440

                 
Query: 241 ccgcat 246
           ||||||
Sbjct: 441 ccgcat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no082_f21.g1 MSMg01no082_f21.g1 CHROMAT_FILE:
MSMg01no082_f21.g1 PHD_FILE: MSMg01no082_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:49 2005
         (657 letters)



>mm_chr12_113781150_113782206
          Length = 1057

 Score = 1270 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactggcgggatttttgtgaagaatgtcactggaagcagacaggggtagggtgaggggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cactggcgggatttttgtgaagaatgtcactggaagcagacaggggtagggtgaggggtc 798

                                                                       
Query: 61  acgttagctggtggtagctagttcagtaggaagctgatctagtcctgaccccttttggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 acgttagctggtggtagctagttcagtaggaagctgatctagtcctgaccccttttggag 738

                                                                       
Query: 121 accaacagggacgcagaagagcctgtgaggtgggttgctttacatgaggtgagggaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 accaacagggacgcagaagagcctgtgaggtgggttgctttacatgaggtgagggaccct 678

                                                                       
Query: 181 ggggcccatggagactaaggctggaggtgcctgtccctatggtcaacctgagtccattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggggcccatggagactaaggctggaggtgcctgtccctatggtcaacctgagtccattga 618

                                                                       
Query: 241 acctgctgcaccacctggcctggtggaccacagtcatccggaatgaggagggcacctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acctgctgcaccacctggcctggtggaccacagtcatccggaatgaggagggcacctcag 558

                                                                       
Query: 301 aaatgacactactgaagggtggttcaaagggtttcatgggagatcagatctggttggctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaatgacactactgaagggtggttcaaagggtttcatgggagatcagatctggttggctg 498

                                                                       
Query: 361 aggccatctttggttcgcaaggaacaggaaagacaaggccaacacatgtcatctcatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggccatctttggttcgcaaggaacaggaaagacaaggccaacacatgtcatctcatgaa 438

                                                                       
Query: 421 tggaacagccccactgatgtgacagcatctaaactggcagatataactggaactgcagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggaacagccccactgatgtgacagcatctaaactggcagatataactggaactgcagag 378

                                                                       
Query: 481 ggcagaatgttgggctctgttcccaactcagctgaccaattcatgtaacccagaccagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcagaatgttgggctctgttcccaactcagctgaccaattcatgtaacccagaccagga 318

                                                                       
Query: 541 gggaaaccaggccagggtagtgaatatttgtgaacctaatgcagagatttgcaaacccgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gggaaaccaggccagggtagtgaatatttgtgaacctaatgcagagatttgcaaacccgg 258

                                                                    
Query: 601 gcctggtctcctaaccgacatctttctacctgggagcacactagccacaagggggcg 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcctggtctcctaaccgacatctttctacctgggagcacactagccacaagggggcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)