Query= MSMg01no083_j01.b1 MSMg01no083_j01.b1 CHROMAT_FILE:
MSMg01no083_j01.b1 PHD_FILE: MSMg01no083_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:19 2005
(306 letters)
>mm_chr12_81277047_81277753
Length = 707
Score = 553 bits (286), Expect = e-162
Identities = 298/302 (98%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 6 gaattctcaccgcacagaatttagctcatcttgcagctccagccctcc-agagctgtcct 64
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 gaattctcaccgcagagaatttagctcatcttgcagctccagccctccaagagctgtcct 448
Query: 65 actctgtaaaccagaccctcctggggccaggacatgcgattctagggtgagatgccctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 actctgtaaaccagaccctcctggggccaggacatgcgattctagggtgagatgccctgt 388
Query: 125 caattgacaaccaagactcagagccactcaagagccagttccttctgcctcatccagtcc 184
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 387 caattgacaaccaagactcagagccactcaagagccggttctttctgcctcatccagtcc 328
Query: 185 cagtgctcctagaccaagatgctggggttgttgggatgctgactctgggtgtcactctgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagtgctcctagaccaagatgctggggttgttgggatgctgactctgggtgtcactctgc 268
Query: 245 taaacattccaccccccttgatactctcagcgaacagagaagctgctggaaaccatcgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaacattccaccccccttgatactctcagcgaacagagaagctgctggaaaccatcgac 208
Query: 305 ca 306
||
Sbjct: 207 ca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 707
Length adjustment: 9
Effective length of query: 297
Effective length of database: 698
Effective search space: 207306
Effective search space used: 207306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_j01.g1 MSMg01no083_j01.g1 CHROMAT_FILE:
MSMg01no083_j01.g1 PHD_FILE: MSMg01no083_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:19 2005
(567 letters)
>mm_chr12_81147794_81148766
Length = 973
Score = 1011 bits (523), Expect = 0.0
Identities = 559/573 (97%), Gaps = 6/573 (1%)
Strand = Plus / Plus
Query: 1 cccttgagcg-atattcctatctggctacacagccaattgaggcgacatcagaaaacaag 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccttgagcgtatattcctatctggctacacagccaattgaggcgacatcagaaaacaag 260
Query: 60 gctaagaaaatatgctgtcacaaccttccctagcacctgactccactttgcttcttatct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaagaaaatatgctgtcacaaccttccctagcacctgactccactttgcttcttatct 320
Query: 120 actggactgtaatttcataagggcgggaacatctaggccacaatgttgctcaactaaagg 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggactgtaatttcataagggtgggaacatctaggccacaatgttgctcaactaaagg 380
Query: 180 ggggggcaccttttaccaccacctaattggcaacaaatttgttgaataacttcctgagtg 239
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ggggggcaccttttaccaccacttaattggcaacaaatttgttgaatgacttcctgagtg 440
Query: 240 aaacactgcctagctgagatttaagtaaaaactaacattttttaattctcaccatgtaaa 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 aaacactgcctagctgagatttaagtaaaaactaacatttttgaattctcaccatgtaaa 500
Query: 300 aagggtaccacatactctttattttatttattcaactcaa-agccctatgaaatcaaact 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aagggtaccacatactctttattttatttattcaactcaacagccctatgaaatcaaact 560
Query: 359 catattgtgtgaatgagcaaactgaagctaacccctataaacgatcaccaaggccatgga 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 catattgtgtgaatgagcaaactgaagttaacccctataaacgatcaccaaggccatgga 620
Query: 419 taagctggccatctcctgtagatgtcttagccaaactaacgggaagatagcaccagaaaa 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 taagctggccatctcctgtagatgtcttagccaaactaacaggaagatagcaccagaaaa 680
Query: 479 aaaatttctggaacaatacattaaaccaaactcttatgggctgg----ggaaataactca 534
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 aaaacttctggaacaatacattaaaccaaactcttatgggctggctggggaaataactca 740
Query: 535 ctgggaataacgttcatggtataaacatgggga 567
||||||||||||||||| |||||||||||||||
Sbjct: 741 ctgggaataacgttcattgtataaacatgggga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 973
Length adjustment: 10
Effective length of query: 557
Effective length of database: 963
Effective search space: 536391
Effective search space used: 536391
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
