XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAATCCGCGGAATT
CACTCTATTACCTTGAAGATAATTGTAGAGTTTTAACAGATAAAACTATC
AAAAAGGAACTCTAATTTCAAGATAGAAAAGGTAAGGTGTTTCTAAATCA
ACTTAAACAATAGGCGTGCTACTAGTGGAGATAATTATGATTGACTTGGC
AAGTGTGGCTACCTATTTCTCATGTCAGTAAGCAGTCTGGAGAGCCCATT
ATGATCTGAGGGAGGTCAAGTTGAAGCTTCAGGGGAAAGTTCCAAGAAAA
AACAATTAGCTCACCATCTCTCTGGAGGCTATCTGGATAGGAAACTTAGC
ATTTCTAAAACCTCTTTGGAACACAAAGGTGATCAGTCACAAACATTCTG
ACCTGGACCAAAATTTGTTTTTCTAAGATCTACTTTTATACTTTTAATTA
TGTGTTGCTATGTTCGTGTGAGTGCAGAAGCTCAAGGAGGCTAGAGGCAT
GAAATTCTTCCAATGAGTTAGTGATAGGCAGTTGTGAACCACCCTGTGTG
GGTTCCTGGACCCAAACTTAGAGCAGTTTGTGCTCTTTACACTCCACCAT
CATCTCTCCAGCCCCAGACCAAACTTTAGTTAGGTCTGAGCCCTCTCCTA
TTCTCAGTCTTGGACTTCTAGCTCAATTCCTATAGAATCCAGTTTTN

TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTTATTGTTTTGATTTTTGTTTTTGAG
CCATGGTTTCTTTGTATAGCCCTGGCTGCCCTGGAACTTACTCTGTAGAC
CACACTCCCCTAGAATTCATTACCTGCCTCTGCCTCCTGAGGGCTGAGAT
TAAAGATGTGTGCCACTCACTTTTGCCCGGGGTGAATTCTTTTTTTTTTT
CTTTTTTTTTTGGCAGNCTTGTTAGAACTTTGCCAATTTTATTGATATGC
TCAAAAAAGATTTTAACTGTATTGATTTTTCCATTGTTTTTGTTTTCTGT
TTCATTAATTTAAGCTTTTTTTTAAATTCCCTCCTGTACTTACTGTGTAT
TTCTTAGCCCCGCCTTTTGATTTCTTTAAATAGAAGTCTAACCATTAGAG
ATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCT
TCCTCCTCTTCCTCTTCATCTTCATTCCCTTCTCTTACTCCTCCTCATTT
TTATCCTTCTTCGCATCTTTTATATTTTGTCGATCATACTTTTCGTGCGG
TTCCTTTATTTTTTTGTTCTCCTCTTTCTTCGTTCTTTTCTTTATCTTTT
CTTTTATTCTTGCTGCCATCCCCAGTTTCTGGTCTATCTTACGTTGGG

Query= MSMg01no083_k17.b1 MSMg01no083_k17.b1 CHROMAT_FILE:
MSMg01no083_k17.b1 PHD_FILE: MSMg01no083_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:27 2005
         (616 letters)



>mm_chr12_52334966_52335980
          Length = 1015

 Score = 1083 bits (560), Expect = 0.0
 Identities = 602/616 (97%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattgtagagttttaacagataaaactatcaaaaaggaactctaatttcaagatagaaa 60
           |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 201 taattgcagagttttaacagatcaaactatcaaaaaggaactctaaattcaagatagaaa 260

                                                                       
Query: 61  aggtaaggtgtttctaaatcaacttaaacaataggcgtgctactagtggagataattatg 120
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aggtaaggtgtttctaaatcagcttaaacaataggcatgctactagtggagataattatg 320

                                                                       
Query: 121 attgacttggcaagtgtggctacctatttctcatgtcagtaagcagtctggagagcccat 180
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 321 attgacttggcaagtgtggctatctatttctcatgtcagttagcagtctggagaggccat 380

                                                                       
Query: 181 tatgatctgagggaggtcaagttgaagcttcaggggaaagttccaagaaaaaacaattag 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tatgatctgagggaggtcaagttgaagcttcaggggaaagtcccaagaaaaaacaattag 440

                                                                       
Query: 241 ctcaccatctctctggaggctatctggataggaaacttagcatttctaaaacctctttgg 300
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ctcaccatctc-ctggaggctatctggataggaaacttagcattactaaaacctctttgg 499

                                                                       
Query: 301 aacacaaaggtgatcagtcacaaacattctgacctggaccaaaatttgtttttctaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aacacaaaggtgatcagtcacaaacattctgacctggaccaaaatttgtttttctaagat 559

                                                                       
Query: 361 ctacttttatacttttaattatgtgttgctatgttcgtgtgagtgcagaagctcaaggag 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatttttatacttttaattatgtgttgctatgttcgtgtgagtgcagaagctcaaggag 619

                                                                       
Query: 421 gctagaggcatgaaattcttccaatgagttagtgataggcagttgtgaaccaccctgtgt 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctaaaggcatgaaattcttccaatgagttagtgataggcagttgtgaaccaccctgtgt 679

                                                                       
Query: 481 gggttcctggacccaaacttagagcagtttgtgctctttacactccaccatcatctctcc 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggttcctggacccaaatttagagcagtttgtgctctttacactccaccatcatctctcc 739

                                                                       
Query: 541 agccccagaccaaactttagttaggtctgagccctctcctattctcagtcttggacttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agccccagaccaaactttagttaggtctgagccctctcctattctcagtcttggacttct 799

                           
Query: 601 agctcaattcctatag 616
           ||||||||||||||||
Sbjct: 800 agctcaattcctatag 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space:   609030
Effective search space used:   609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)