BAC Information

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BAC

Clone NameMSMg01-087J21
Chromosome12 (Build37)
Map Location 49,723,802 - 49,724,088
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664891, Gm1818
Downstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087J21.T7 (MSMg01no087_j21.b1)MSMg01-087J21.TJ (MSMg01no087_j21.g1)
ACCAG306599AG306600
length702707
length of high quality
(start - end)
287 (72 - 358)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no087_j21.b1 PHD_FILE: MSMg01no087_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:48 2005CHROMAT_FILE: MSMg01no087_j21.g1 PHD_FILE: MSMg01no087_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAAGGAGGCGCGGAATTC
AATTTGATTACTAGAAGAATGAAGGCTGCAGATAACAGTCTCAGCATAAT
GAAAGTTGTATATGAGAACCCACAGCCAAAATTATGCTAAAGAGGAAAGA
TTGAAGCAATCCCATTGAAGTCAGGAATGAAACAGGGTCTCCACTGTGTG
CAGTCCTTTGAACACTTTGTTTAAAGTAGTAGCTAAAGCAATAATGGAAA
AAGAAATTAAAATAATACAAACATAAATAAATAAGAAGTCAAAGCAATTC
TATTTGTAAATAACACATATTTTTTATTTAAGATTCCAAAATAATTCCAC
CAGAAGATTTTTGTACACCACCCGCCCAAATCAGCAGTGTGGCAATATAT
AGAATCAATTTACTCAAATCAAATGTATTTTTTATTTTGTACACCAACGA
TGAACTTACAAAGATCATAGAGTGACTTTCATTCACAATAGCCTTAAAAA
TATCAAGGAATAAACTTAACTAAGGAAGTGAGGCACATCTAGAATTAGAA
CTTTAAACCTCTGAAGAAAGAGATATGTACTAGGAAAGAGAAAGTGACTC
CATGCTTATTTAACCAACAGTCATATACCAATTCAATTCAATCCCAATAT
AACAGTCTATTACATTCTTCTTAGAAAAGATGACAGGTGACTAACATAAT
CA
TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTCACTAGATAAGTACAATTC
TCTAGAAATCCAATAGGTTTACTTTACCAACCCTGCTGCTTGCACATTTC
ATCTACAAACAAATTACTCTGAAGTCTCTGCATTTTCTAAGATGGCAGTA
TCTCCGTTTCCTTTTCTTAATTTGAATTTTAAAAGTCTGTTGGCATTGCG
TATATATATATGGTTTTGTACAAGTCTCTGCATTTTCTAAGATGGCAGTA
TCTCCGTTTCCTTTTCTTAATTGGAATTTTAAAAGTCTATTGGCATTGCG
TATATATATATATGTTTTTTGCCCCCCCGCCCCTTGAACATTTGGCTTCT
GTACTATTGCATTAACTTTTGTCTTCAAAGTTTAAGCAGCAATGTCTTCT
GATGTAGTGTATTATGTAAGTATTACATGAGGTGAGGGCGGTATAAATTT
ATAATCTGAAGTTAAAGTAGTTGTCATACAGATCACAATTTTGAAGCAAT
GCTGATTATACTCTTATGACATTTGCTTTCTTTCATATAACACTATATAT
CAGTCCAAAGACTTTTTAGTACCTCTAGCTTCCAGAAGATTACCAGGAGA
TATTTAATTCTAATTCTATTTCTTTTATTCACAATGTGTGACATCAAGTG
AAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_j21.g1 MSMg01no087_j21.g1 CHROMAT_FILE:
MSMg01no087_j21.g1 PHD_FILE: MSMg01no087_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:48 2005
         (287 letters)



>mm_chr12_49723602_49724288
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtcactagataagtacaattctctagaaatccaataggtttactttaccaaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggtcactagataagtacaattctctagaaatccaataggtttactttaccaaccctg 260

                                                                       
Query: 61  ctgcttgcacatttcatctacaaacaaattactctgaagtctctgcattttctaagatgg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcttgtacatttcatctacaaacaaattactctgaagtctctgcattttctaagatgg 320

                                                                       
Query: 121 cagtatctccgtttccttttcttaatttgaattttaaaagtctgttggcattgcgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtatctccgtttccttttcttaatttgaattttaaaagtctgttggcattgcgtatat 380

                                                                       
Query: 181 atatatggttttgtacaagtctctgcattttctaagatggcagtatctccgtttcctttt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 atatatggttttgtacaagtctctgcattttctaagatggcaatatctccgtttcctttt 440

                                                          
Query: 241 cttaattggaattttaaaagtctattggcattgcgtatatatatata 287
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaatttgaattttaaaagtctattggcattgcgtatatatatata 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)