BAC Information

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BAC

Clone NameMSMg01-088I08
Chromosome12 (Build37)
Map Location 48,749,644 - 48,844,097
singlet/doubletdoublet
Overlap genenone
Upstream geneNova1, LOC100039190
Downstream geneEG664891, Gm1818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088I08.T7 (MSMg01no088_i08.b1)MSMg01-088I08.TJ (MSMg01no088_i08.g1)
ACCAG307254AG307255
length737696
length of high quality
(start - end)
325 (122 - 446)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no088_i08.b1 PHD_FILE: MSMg01no088_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:01 2005CHROMAT_FILE: MSMg01no088_i08.g1 PHD_FILE: MSMg01no088_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,843,773 - 48,844,097)(48,749,644 - 48,749,925)
sequence
ATATTAATATATTTTTTTTTCCCATCATCCTTCACAACAAACCCCCCCCG
CCCGGNTNTTCTATAATTGCGGCGCTAATACGACTCCTATTCGAAGAGGA
CCGCGGAATTCAAAAGTTCCCAAAATATTTTATAGTTTACCTCAGTGCAT
GAAAATTTTACCCATTTTATTTCACAGGAGTGTCATAGAAAACTAGTGTT
GCATTTAACATGCTCATAGGCTTCATGTACCATTACAGGTAATGTGGATA
CTGAAATGATGCACACAGAAAGGACCAGGGGTAATTCACTTTTATTTTGT
CTTCCATATTTTCTGTCACTCTGTGTAAAAGCAGAGGAAGAATCATGAGT
AGGTAAGGCATATTAGGAATGCTACATTTATATTTATTAAGTTTTTATTT
TTCCAGAGGAAATGTCTCTTAGACATTGAACTGTGGCTTTTTGAGAAGTC
AAGTGATTAAAAGAACCTAATGAGGAAAAGAATCAATGGTTCAGAAGAAC
TGAAATTAGAATTAAGAATTAATTGATTTTGAAAAAACAAATTCCAAGGG
AATATTATTAGAAATTCCACTAGAACCTTTAAGCCTGCTGTAATAAAACG
AGCACTGTTTATGAACATTTTGAATATATAACTTTTTGAGTGTTAACAAA
TTGGCTTTTGAAAAATATTTCTCTGAAATACATCAATCAACGCCAACTTC
ACGGAAGTAACGCACCTTGACCTCACCGCATCACCAG
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAAGCCTATGTTTGTAGTGTCTGTAG
AAAACAAATGCAGGGGACCCCATGATATTTGTAGGGGAAAACTGAAGATT
ATCTAAAGATGCTTTACAAAGAGTTTTATTATGGGAAATACTAATTAATA
TTATATAGGATTAATAGGATATAGTAGTAAGAAGAAACTCTAAAGCCCCC
TCACTTTTCTTGTATAACATAGAGTATATGTTTATCCATTGAAATGCAGA
ATTAAGAGGACATTGAAGGGAAGAAGTGAATAGTTAAATAATCTGAATTA
TAATGATTTGAAATCCGCCGCCGCCTTTATTTTACGTAGTTAATTCGGCA
CCTGTAGACTTATTCTTTTCAAAACATTTTTAAACAAGTGTTCTTAAATG
ACTCAACCTGACTAAAGGTAGGAGAGGAAAATGGCTAATAAAACAAGGGG
GTATGGACCTGTTTAGAAGTAGTTCTTTGGAGTGATCCCAATCTTCATTG
TCTGCAGTCTAGCCATAATCAAAACACCAAACATGTATCAGCAGCAGTAT
CTCCATCCAGAAGAGATGGAGAGTCTCTGCTGAGCAGCATGAGTCTGCCT
CAGCAGCAAGAAACAGTTATGAAAAAAGAGAAATTCCTTTGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_i08.b1 MSMg01no088_i08.b1 CHROMAT_FILE:
MSMg01no088_i08.b1 PHD_FILE: MSMg01no088_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:01 2005
         (325 letters)



>mm_chr12_48843573_48844297
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatattttatagtttacctcagtgcatgaaaattttacccattttatttcacaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aaaatattttatagtttacctcagtgcatgaaaattttacccattttatttcacaggagt 466

                                                                       
Query: 61  gtcatagaaaactagtgttgcatttaacatgctcataggcttcatgtaccattacaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtcatagaaaactagtgttgcatttaacatgctcataggcttcatgtaccattacaggta 406

                                                                       
Query: 121 atgtggatactgaaatgatgcacacagaaaggaccaggggtaattcacttttattttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgtggatactgaaatgatgcacacagaaaggaccaggggtaattcacttttattttgtc 346

                                                                       
Query: 181 ttccatattttctgtcactctgtgtaaaagcagaggaagaatcatgagtaggtaaggcat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 345 ttccatattttctgtcactctgtgtaaaagcagaggaagaatcatgagtagggaaggcat 286

                                                                       
Query: 241 attaggaatgctacatttatatttattaagtttttatttttccagaggaaatgtctctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attaggaatgctacatttatatttattaagtttttatttttccagaggaaatgtctctta 226

                                    
Query: 301 gacattgaactgtggctttttgaga 325
           || ||||||||||||||||||||||
Sbjct: 225 gaaattgaactgtggctttttgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no088_i08.g1 MSMg01no088_i08.g1 CHROMAT_FILE:
MSMg01no088_i08.g1 PHD_FILE: MSMg01no088_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:01 2005
         (282 letters)



>mm_chr12_48749444_48750125
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagcctatgtttgtagtgtctgtagaaaacaaatgcaggggaccccatgatatttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 atgaagcctatgtttgtagtgtctgtagaaaacaaatgcaggggataccatgatatttgt 260

                                                                       
Query: 61  aggggaaaactgaagattatctaaagatgctttacaaagagttttattatgggaaatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggaaaactgaagattatctaaagatgctttacaaagagttttattatgggaaatact 320

                                                                       
Query: 121 aattaatattatataggattaataggatatagtagtaagaagaaactctaaagccccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaatattatataggattaataggatatagtagtaagaagaaactctaaagccccctc 380

                                                                       
Query: 181 acttttcttgtataacatagagtatatgtttatccattgaaatgcagaattaagaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttttcttgtataacatagagtatatgtttatccattgaaatgcagaattaagaggaca 440

                                                     
Query: 241 ttgaagggaagaagtgaatagttaaataatctgaattataat 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaagggaagaagtgaatagttaaataatctgaattataat 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)