BAC Information

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BAC

Clone NameMSMg01-088K13
Chromosome12 (Build37)
Map Location 54,800,937 - 54,801,167
singlet/doubletsinglet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088K13.T7 (MSMg01no088_k13.b1)MSMg01-088K13.TJ (MSMg01no088_k13.g1)
ACCAG307357AG307358
length542672
length of high quality
(start - end)
---231 (110 - 340)
definitionCHROMAT_FILE: MSMg01no088_k13.b1 PHD_FILE: MSMg01no088_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:13 2005CHROMAT_FILE: MSMg01no088_k13.g1 PHD_FILE: MSMg01no088_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATTCNCCTACACCCAACCAAAACCCGAATCCGATCCCACCCAAAACC
CTCTCTACTACCCNCATAATCCTTACAAAAAAATTTTTTCTTTTTTTTTT
TTTTTTTTTTTTTTTGCCCGCCCNNNNNNNNNNNAAAACAACATACAACC
TTCNNNNNNNNNNCCCCCCCAATAATCNNNNNNNNCNNNAACCCAAAAAA
ATTTTTTTCCCNTNNNNNNNNNNNNNNCCCCTAAAANNAACCCCCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAANTN
NNNNNNNNNNCCCNNCCCCNCNNNNNNNNNNCCCNNNNNCCCCCCCCCCC
CCCCCCCCNNNNCCCCNNCNNCCCCCCCCCCCCCCCCCCCCNCCCCCCCC
CCCCNNCCCCCCCNNNCCCCCCCCCCCCCCCCCNCNNNNNNNCCCCCCCC
CCCNCNNCCCCCCNCCCNCCCCCCNCNCCCCCCCCCTCTTTTTCTATATT
TCTTTTCCGGCTGGCCNCCCCCTTCCCTCTCCCTCTTTACAA
GGCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATGAATGCCCATGTCTTAGCAAAATGGGTCTTATTTTTGTGTTGT
CCCGTTGACTATGAAGTCCACTAATCCCAGAGACTGGAGAAACTGTAAGG
TGTGTTACTAACTTAAGCATCTGCAATTATTCAATGCTTACTACTGGCTA
AGCTAACTCTCCACCCGTACGACTTGTGCCTGAGTGTTGCTGTGAGTGTG
TATGTACACTCTTAGAATGATGAGAACCCCGCAGGAGTGATTTGGGTGTT
TTTCCAGAGCCCTGGCTTATGCCATGGAAACATTTCACTGATTTATTACA
CGACCAAGCCAAGCACGGTTTCATAAAATCTGTCTAAAACTCTTCACCAA
GGGTATTCATTCATAGGAATATGGCTCCTTCCCTAGGATAGCGGATCACT
CATGTACAGGAGTATATGCCTGGCTTCAAATCCCATATTTTGCTGCTTGC
TGTGAGGCCGGATATGCTTTTTGCTTGTTTGCCTGCTTGCCTTTTCTTTC
TCCTCCTCTAAAATTTACTGCCTACTATCTACAATATATATTACTTGGTT
CATATCCCCTATTTCCTACCTGCTGACAATGAATGAAATATTAGTTACAA
GCCCCTGAGTATCAGTGTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_k13.g1 MSMg01no088_k13.g1 CHROMAT_FILE:
MSMg01no088_k13.g1 PHD_FILE: MSMg01no088_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:13 2005
         (231 letters)



>mm_chr12_54800737_54801367
          Length = 631

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaagtccactaatcccagagactggagaaactgtaaggtgtgttactaacttaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaagtccactaatcccagagactggagaaactgtaaggtgtgttactaacttaagca 260

                                                                       
Query: 61  tctgcaattattcaatgcttactactggctaagctaactctccacccgtacgacttgtgc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgcaattattcaatgcttactattggctaagctaactctccacccgtacgacttgtgc 320

                                                                       
Query: 121 ctgagtgttgctgtgagtgtgtatgtacactcttagaatgatgagaaccccgcaggagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagtgttgctgtgagtgtgtatgtacactcttagaatgatgagaaccccgcaggagtg 380

                                                              
Query: 181 atttgggtgtttttccagagccctggcttatgccatggaaacatttcactg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgggtgtttttccagagccctggcttatgccatggaaacatttcactg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)