BAC Information

Click to search

BAC

Clone NameMSMg01-089A02
Chromosome12 (Build37)
Map Location 60,128,371 - 60,128,710
singlet/doubletsinglet
Overlap geneSip1
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a
Downstream geneTrappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A02.T7 (MSMg01no089_a02.b1)MSMg01-089A02.TJ (MSMg01no089_a02.g1)
ACCAG307615AG307616
length7441,388
length of high quality
(start - end)
408 (104 - 511)---
definitionCHROMAT_FILE: MSMg01no089_a02.b1 PHD_FILE: MSMg01no089_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:40 2005CHROMAT_FILE: MSMg01no089_a02.g1 PHD_FILE: MSMg01no089_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCCCCCCNTCCCCTCCCCCTCCCTTCCCTCCTTTCCCTTCTC
TTTTGNNNCGCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCA
AGGTCCGCGGAATTCATTGTGTGTCACTTATCAAGGACAGCACTGCTTGT
AGCAGCAAAAGCGCACAATGACTCAACAAAGACTAAACCACAGCACATAC
CCAACAGGGGAACACTCACACACATACAAAGGGCGTGGGGGAATGCGGAG
CTCTTCTGTAAAGCTGCCTAGGTTTGGGTCCTGTCTCTGCCATACACTAT
CTAGCTCTGTGATGTTCAGGAAGCAGCAAAGGCACTTTGCATCCTTTTGC
CAGCTTTCTCATTTCTAAACTGGGTGGTACAGGATTAAATGAGTTCCTAT
TATGACACACTAAGAAAAATGCTTGGAAGAAAGCACCAGGAAAATTAAAC
ATAGTGATTATAGATCAAGAACTAGGTGTTTACTATGTGTGCATTTTCCA
AAAGCATCTTGTTTGCTGGAGGGAAGGATAATTTGAGGGTATTTAGTTAA
TATGAAGCTTTACAGAGGTGTTAGCAAGACCAAACCTATCCTAATCCCAC
CACAAACTGTTGATCAATGAATCCTAGCATGCCCAGTACTATACCTAAAA
TCAACGTGTGCCTTTTCCTTAGACATCACGCTGCATCTTCCCAATCAACC
CCATTTAAACCTTTGCATAGAACGGACCGACAACCAGCCTTGCC
TGTGTTCTCTGTTTTTTCTTNTGCTNNCGCTTTTTTTCGGGGCGCGCGGC
TGGCGTCGTGTCGCGCTGCTGCGCCGTGCGGTCGACGCCTGTCGTGTCTG
TCGGCTGGGNCGCNCGAGGCGTCTTGGAGGTAGGCCGCGGTGGGGTGTGA
CGTGCGTCGGCTTGGGTGAGNNGGTTGCGTGACGGTGCGGGTGTGCGTGT
TTGTGTCTTGGGGCGCGTGTGCGCCNTTCTGCTCTTTCCGCGACCTGCGT
NCTCGTGCTCTAGTCGTTCCGTCGTTGCGCGTTCTGCGGCCCTTGTTCGT
GTGCCTCCGTGTCGTTCCGCCTGTTGCTGCGCCGCTTTTTTCTCCGTTTC
TCGGCTCGTCCNCTTCCGTCGCCCTTGCTGTTTCTTTTTGTGCGCGTCGC
TCTCCTGCCTGCGCTGCTCGCTTCCTGGCTTGTGTNTGCCGCCCGCGTTG
CTATGTAGTGGCGTGTGTGTTGTCGTATCACTTATAACTTACATCATCAC
CCTCTAATACGCGTATTTCGGTGGTGTGAGAAATAGCGGTATGGGCATTG
CGGCGCCATTTGTTAATTCTATTATAAACACACATATTATATCTGTCGCA
TAGAGAACAGAAAAGCAGTCATNACAATAATAACGAATAAATAATGATCG
AGAGATCCGCGGCGATCAGCGTACTCCGGCGGCAATGTGATGTAATAGAC
GAATGATTATCCGGATAGACAACAAATCTATCAAATCAGCATACAAAAAA
CGTATATCCAACAATAACCACAATTACTCCCACCCATTCCCCATAAATTT
TACCACTAAATATCAATTAACTATCCCATATATTATCATTCCCCATCCCT
TTCACATTCCTATAAAAATTACATCAATATATGAATAGAACAAAAATATA
TTACATGCAACTTCCTATGCCCATTATACAAAATAATTAATAGACATCTC
TATTAATAATATATAACACGTGTATAGATAGGCGAGAAGAGAATGCATAA
CAAGAATAGAACGACATGCCGCGACTGGGTAGCGCCCGGACGGTCCATTC
TACGCATATGACATAACGCAGAGCACTCGCCCCCTCATGCTCAGCCTACA
TACCAAAGTAATATAGCATTAACATGCGTAATATTATATTCCAAAGGAGA
CAAGAGAGGAAAAAAGATAATAATATATGTTCAATACCTTCCACGGTATA
TCATAATAGTATATGGATAAGACCTCTGCGAGCGNTATACCTACATTAAT
CCTTCGCACTGATTTGATTATCCGATTCACCCCCGTTAATAATAATAATA
TAAAACACACACATATAACTAATCGCTATCTTGCTGTGTGTGCTCGCGCC
CACTCTAATCTTATACTCAATATATTACACCTCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a02.b1 MSMg01no089_a02.b1 CHROMAT_FILE:
MSMg01no089_a02.b1 PHD_FILE: MSMg01no089_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:40 2005
         (408 letters)



>mm_chr12_60128371_60129181
          Length = 811

 Score =  561 bits (290), Expect = e-164
 Identities = 327/342 (95%), Gaps = 7/342 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcattgtgtgt---cacttatcaaggacagcactgcttgtagcagcaaaagcgcac 63
           |||||||  ||||||   |||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 340 gaattca--gtgtgtgcacacttatcaaggacagcactgcttgtagaagcaaaagcacac 283

                                                                       
Query: 64  aatgactcaacaaagactaaaccacagcaca--tacccaacaggggaacactcacacaca 121
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 282 aatgactcaacaaagactaaaccacagcacatctacccaacaggggaacactcacacaca 223

                                                                       
Query: 122 tacaaagggcgtgggggaatgcggagctcttctgtaaagctgcctaggtttgggtcctgt 181
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tacaaagggtgtgggggaatgcggagctcttctgtaaagctgcctaggtttgggtcctgt 163

                                                                       
Query: 182 ctctgccatacactatctagctctgtgatgttcaggaagcagcaaaggcactttgcatcc 241
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 162 ctctgccatacactagctagctctgtgatgttcaggaagcagcaaaggcactttgcattc 103

                                                                       
Query: 242 ttttgccagctttctcatttctaaactgggtggtacaggattaaatgagttcctattatg 301
           ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 102 ttttgccagttttctcatctctaaactgggtggtataggattaaatgagttcctattatg 43

                                                     
Query: 302 acacactaagaaaaatgcttggaagaaagcaccaggaaaatt 343
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  acacactaagaaaaatgcttggaagaaagcaccaggaaaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 811
Length adjustment: 9
Effective length of query: 399
Effective length of database: 802
Effective search space:   319998
Effective search space used:   319998
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)