BAC Information

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BAC

Clone NameMSMg01-089G11
Chromosome12 (Build37)
Map Location 29,591,399 - 29,591,584
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
Downstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089G11.T7 (MSMg01no089_g11.b1)MSMg01-089G11.TJ (MSMg01no089_g11.g1)
ACCAG307911AG307912
length670775
length of high quality
(start - end)
67 (110 - 176)186 (181 - 366)
definitionCHROMAT_FILE: MSMg01no089_g11.b1 PHD_FILE: MSMg01no089_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:12 2005CHROMAT_FILE: MSMg01no089_g11.g1 PHD_FILE: MSMg01no089_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTCGGAGAGGATCCGCGGAATTCCCGGACTGCCGTTTGCAGCT
TTGCTCTGCGGGCAGCACTGTTTTCCAGAATGCCGAGCTCTTCTCAGCGC
AGCCAGCAGGGGCTGGTGAACTTGAACTTCTTAGATTTTTTTGCTCTTTG
AAGCTATGCTTTGTGTTATACTCAGTCTACTCTAATGATCTGTGGTGACA
TTCACCATCATGGGGACAGGTGCCCAACTCTTCTCTCTAGATGCCTCTAG
AAAACCTTGGCTCTACAGCTCACAGCTCTGCCTTGTCTGACTGTATATAA
TAGCCTTCTCAGGAAGAACTACCCATTGTACCTTGCAAGTGAATGCCTAT
ATCTTTTTTTTTTTTTTTCCTTTTCGCATATGAAGATCGCCCATGCGTTA
TTATCTTTCCTTGTCATCTTTTTCTTCTCGCCCATTTTTTCTTTTCACTC
CCTCCTCTTTTTTTCTGTCCCTTCTTCCTTTTTTCCCCCGTTCTATCCTC
ACTACTTTCCCCATTCTCTCTCCCTCCTTTTTTCCCCCCTTCTCCTTTTT
TTTTCCCCCTTTTCTTCCCTTTTTCCCTTTTTTCCCCTTTTCCCTTTCCC
TTCCCCCTTACTTCTCGTTTTTTTTTTTTTCTCCCTCTTTTCCTCTCCCT
ATATTTCCCCCCCCCCTTCT
TTTTTTNNNNTTNNNNNNNNTTCCCTTTTTTTTTTTTTCTTTTCCTCATA
TACCTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAAAGACACCCTAGGCAT
ATCCCTGCCCATTTGTCCTCATTTCCCCACTTCATATGATCCTGTGGGTT
TATCAGTGCTCCTGTCCATACCCTCAAACCAGAGGCATACAGAATCACCC
TCACTGCAAGGGAAAGAGGTTCAAGGACCTCAGAGGAGGCCAGGTGAGCA
TTCCTCAGCACACGGCACAGAGCCATGTCTCTTTGGAAAAGGAGAGGGGG
GTTTTAAAAAGACTGGGAGAAGGTTATTTATTTTCTTCAGTAAAGTAGCC
ACTGACAGGATGTTTTTTTTTCCTCCCCCCCCTCTCATTTATGATTCTGA
ATGTCATCTCACTTAATTCATCCCCCAATACAAAAAAAAATGAATGGGGG
GATGAGAGACAATTGATGCACAATCTTACTTCATATGTTAGCATGATATA
TACCCCTATGTTTCCTACTCCTAAAGCCCGCCTGGGGGGATATTTTCCAT
ATATCAGCACTGTATTCTACTAAATACCCACATATGCTTCTACTCTCTTG
CCCTTATCTTGTTCCACCTATATAGCTAGTTCTATTGACCTTAGAATATC
TGCTATATCTTCCCCCTTTTATCAATTTTTTACTTCCCCTCCATACCTGG
CCTTTATCATATACCATTTATCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_g11.g1 MSMg01no089_g11.g1 CHROMAT_FILE:
MSMg01no089_g11.g1 PHD_FILE: MSMg01no089_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:12 2005
         (186 letters)



>mm_chr12_29591199_29591784
          Length = 586

 Score =  352 bits (182), Expect = e-102
 Identities = 185/186 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatatgatcctgtgggtttatcagtgctcctgtccataccctcaaaccagaggcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttcatatgatcctgtgggtttatcagtgctcctgtccataccctcaaaccagaggcatac 327

                                                                       
Query: 61  agaatcaccctcactgcaagggaaagaggttcaaggacctcagaggaggccaggtgagca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaaccaccctcactgcaagggaaagaggttcaaggacctcagaggaggccaggtgagca 267

                                                                       
Query: 121 ttcctcagcacacggcacagagccatgtctctttggaaaaggagaggggggttttaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcctcagcacacggcacagagccatgtctctttggaaaaggagaggggggttttaaaaa 207

                 
Query: 181 gactgg 186
           ||||||
Sbjct: 206 gactgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)