BAC Information

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BAC

Clone NameMSMg01-090E05
Chromosome12 (Build37)
Map Location 118,141,590 - 118,142,109
singlet/doubletsinglet
Overlap genePtprn2
Upstream geneIgh, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090E05.T7 (MSMg01no090_e05.b1)MSMg01-090E05.TJ (MSMg01no090_e05.g1)
ACCAG308541AG308542
length668693
length of high quality
(start - end)
520 (28 - 547)621 (56 - 676)
definitionCHROMAT_FILE: MSMg01no090_e05.b1 PHD_FILE: MSMg01no090_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005CHROMAT_FILE: MSMg01no090_e05.g1 PHD_FILE: MSMg01no090_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGGAATTCCCAGATAGCCTCACCTAGGAACAGGAAGAGATCC
TAAATGACAAAGCAGTTGCACTTGCCACTCATGGTTAACACCATGTGGTA
TCTGATGGGGATATATGTGGTACTAAATGTATACCTACTCACTAATTTCT
GTATTACTTTTTGTAAAATTATCTAAATAAATTTAAGTTCTGTTACCAGG
GTTATACCTCCCTTCACTAACAACAAAGAATGTCTCTATTTCACTCAGTC
CCATGGAAACCAATGCAAACCCTGAGTGGGCTTTCACGTAGCCCATAGTA
ACCCCAGAAATTTCTACAGAAGGCTCTGTTAGGTTTACAGCTGTACCAAC
AATGACATCCCACTGTATGTCTATCCCAGTAAGACACTGGGAAGCTTTTA
ATGACACTGGTAAAGTTCTACATGATCTTTTTAAACTAAAGGGCCCAGGA
AATGCATCTTGAGATAAAATTCTACTTCTTTACCCACTCTTGGAGCTAGT
TCTCAGTAGCTTATCCATGATCTCCCTGGAGCCAGGACTCTTTGAGGGTG
GGAGTGTGTGCTTGCTGTATGTGGGGTAATATCTTCTTTTATGCATCCTT
TTCTCATACAGCCCTTGCTCAATCTATAATAACCTGGTATTGTTTAAAAC
ATGAAAGGAGTACTTGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGTTGAGTTCAGTTGAGTTCCAGCAGTTCTGTTCAGTTCCTAGTC
AGTGCAATTCAGTTTGTGGAATTCAGAGGCAGTTTTTCTAAGAAGAGCAA
TTCAGTTAGAAGCTGAGAGAAGCCAGTTTGAATTTGTCAGCTTGGAGAGG
AGTTTGAGCCACAACAGCTGAGTTCAACCAGCCAGCCAGAGTTTAGAAAG
AACTCGAAAGGTGAGTTTATTTAGCAGTAAGCCTCCAAGATGAAAATTAT
ATCAGGTGAATAAAAGTTACCTTTACAAATAAGGCTAGCAGAGGATTTCT
CACAAGATACTGTCCTTGGAGTGAGGTAACCCAATCACAAAAGAACTCAC
ATGATATGTACTCACTGATAAGTGGATATTAGCTCAGAAACTTAGAATAC
CCAAGATACAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACGA
AGACCAAGGTATGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACAC
CCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGG
ACCATATAGAGACTGCCATACCCGGGGATCCATCCCATAAACAGCCTCTA
AACACTGACACTCCATTGCGTACACTAGCAAGATTTTGCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_e05.b1 MSMg01no090_e05.b1 CHROMAT_FILE:
MSMg01no090_e05.b1 PHD_FILE: MSMg01no090_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:22 2005
         (520 letters)



>mm_chr12_118141390_118142309
          Length = 920

 Score =  897 bits (464), Expect = 0.0
 Identities = 506/520 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctaggaacaggaagagatcctaaatgacaaagcagttgcacttgccactcatggtta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cacctaggaacaggaagagttcctaaatgacaaagcagttgcacttgccactcatggtta 661

                                                                       
Query: 61  acaccatgtggtatctgatggggatatatgtggtactaaatgtatacctactcactaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acaccatgtggtatctgatggggatatatgtggtactaaatgtatacctactcactaatt 601

                                                                       
Query: 121 tctgtattactttttgtaaaattatctaaataaatttaagttctgttaccagggttatac 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 600 tctgtattactttttgtaaaattatctaaataaatttaagttctgttagcagggttatac 541

                                                                       
Query: 181 ctcccttcactaacaacaaagaatgtctctatttcactcagtcccatggaaaccaatgca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| |
Sbjct: 540 ctcccttcactaacaacaaaggatgtctctatttcactcagtcccacagaaaccaatgta 481

                                                                       
Query: 241 aaccctgagtgggctttcacgtagcccatagtaaccccagaaatttctacagaaggctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaccctgagtgggctttcacgtagcccatagtaaccccagaaatttctacagaaggctct 421

                                                                       
Query: 301 gttaggtttacagctgtaccaacaatgacatcccactgtatgtctatcccagtaagacac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 420 gttaggtttacagctgtaccaacaatgacatcccactgtatgtctgtcccagtaagacac 361

                                                                       
Query: 361 tgggaagcttttaatgacactggtaaagttctacatgatctttttaaactaaagggccca 420
           |||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 360 tgggaagcttttgatgacactggtaaagttctatgtgatctttttaaactaaagggccca 301

                                                                       
Query: 421 ggaaatgcatcttgagataaaattctacttctttacccactcttggagctagttctcagt 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 300 gaaaatgcatcttgagataaaattctacttctttacccactcttggagctagtcctcagt 241

                                                   
Query: 481 agcttatccatgatctccctggagccaggactctttgagg 520
           |||| |||||||||||||||||||| ||||||||||||||
Sbjct: 240 agctcatccatgatctccctggagctaggactctttgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)