Query= MSMg01no090_f18.b1 MSMg01no090_f18.b1 CHROMAT_FILE:
MSMg01no090_f18.b1 PHD_FILE: MSMg01no090_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:30 2005
(539 letters)
>mm_chr12_35339233_35340170
Length = 938
Score = 895 bits (463), Expect = 0.0
Identities = 517/535 (96%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 5 gaattcatggtatctgctctaaactggacctctagaccacccctccaaactacagagaac 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggtagatgctctaaactggacctctagaccacccctccaaactacagagaac 264
Query: 65 attgccaaaggggacagaaaggataaaagagtgaaaagatggagagatacgccataggaa 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgccaaaggggatagaaaggataaaagagtgaaaagatggagagatacgccataggaa 324
Query: 125 aggatatcccctgcacatgatatggccattcatgaattcactgtaacccaggccatctgc 184
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 325 aggatatcccctgcacatgatatggccattcatgtattcactgtaatccaggccatctgc 384
Query: 185 acaagacatgcacaaggctgggcttgcccacatttcacccactgatggagtaggagtcca 244
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 agaagacatgcacaagactgggcttgcccacatttcacccactgatggagtaggaaccca 444
Query: 245 gaagactactgtgctatctccttattcagggagaaggtgttcttttctgcagtggtgaag 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 gaagactactgtgctatctccttattcaaggagaaggtgttcttttctgcagtggtgaag 504
Query: 305 cagcccttgctccagtaaataacctccgacccttggtaagaaactctaattaaacacagt 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 cagcccttgctccagtaaataacctccgacccttggtaagaaactctaactaaacacagt 564
Query: 365 gagccacacaccaaaataatgaatcgaagtgttgggtgggaccttgttgtggaaaggggt 424
|||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct: 565 gagccacacaccaaaataatgaattgaagtgttgg-tgggatcttgttgtggaaaggggt 623
Query: 425 ttcaaaaaaagagggaggatagaagagtgtgggatgagcgtgaccaaactaatttataca 484
|||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 624 ttcaaagtaagagggaggatagaagagtgtgggatgagcatgaccaaagtaatttataca 683
Query: 485 aaaagaagatgccaggcaacaaaaactttaaaaggagtcatgattttagtattta 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaagaagatgccaggcaacaaaaactttaaaaggagtcatgattttagtattta 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_f18.g1 MSMg01no090_f18.g1 CHROMAT_FILE:
MSMg01no090_f18.g1 PHD_FILE: MSMg01no090_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:30 2005
(287 letters)
>mm_chr12_35466374_35467058
Length = 685
Score = 513 bits (265), Expect = e-150
Identities = 281/287 (97%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1 agtggcagtgttcctgaagctgaagtagtcaggagggagttatggcaagaagaaagagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtggcagtgttcctgaagctgaagtagtcaggagggagttatggcaagaagaaagagct 426
Query: 61 cttgcacacctgccatgtgtggaactcttagcaattttgtatagctggctatagtctaaa 120
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 425 cttgcacacctgccatgtgtggaactc--agcagttttgtatagctggctatagtctaaa 368
Query: 121 ctgtgggacagactggagaggcacagcaacatgagcagtggctagttcagagtgggctct 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgtgagacagactggagaggcacagcaacatgagcagtggctagttcagagtgggctct 308
Query: 181 gagtcaccgtcaggttgtgaatgcctttggttaggaagactcaaagggtttcaaggatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagtcaccgtcaggttgtgaatgcctttggttaggaagactcaaagggtttcaaggatca 248
Query: 241 ttccatctgcagcaggagggaaagctaggctccagagacaaagacct 287
|||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 247 ttccatgtgcagaaggagggaaagctaggctccagagacaaagacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 685
Length adjustment: 9
Effective length of query: 278
Effective length of database: 676
Effective search space: 187928
Effective search space used: 187928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
