BAC Information

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BAC

Clone NameMSMg01-090I17
Chromosome12 (Build37)
Map Location 50,489,347 - 50,489,568
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1
Downstream geneENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I17.T7 (MSMg01no090_i17.b1)MSMg01-090I17.TJ (MSMg01no090_i17.g1)
ACCAG308747AG308748
length688726
length of high quality
(start - end)
228 (3 - 230)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no090_i17.b1 PHD_FILE: MSMg01no090_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:44 2005CHROMAT_FILE: MSMg01no090_i17.g1 PHD_FILE: MSMg01no090_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATCCGCGGATTCAGCTTTCCTTTCACTTTTGATAGTAATACTGTGTTT
CCTCCGTGGTAGTACATACTTATTCCATAAATAAAGCCCATAGCAGAAGC
AAGCAATAGTCATCCTATTTTTCCTCCAATCTAAATGTAGGCCTTTCCCT
GTTTGTCTCTCAGCTATGCAATGAAGATTTCTTTGCCTAAGCCCACATTC
CCTGCCTCCCCCCTTACTTGTGTGTGTGTGCGTGTGTGTGTGATTCACTT
TTAAAAAACTGTTAGATTACCAAAAAGACTTATATCTAAGCATAATCTAT
TCTCACATTAAGATGGATATTATTTTCCCCCCCCACCCCCCCCATCTCTC
TCTGTTCAATTTGATTCCAGCTCCCCCCTTTTAAATAAAAAATATCTCCC
GTCTTCCCCCGTTTCTTCTCTTCTCCCTTTCTCCTTTCCCACATTTAATA
ACCATACTTCCTTTTTTTTCAATATCATCTATTCTAATTTCATTATCTTT
TTTTAGTCCCTTGCCTCTCTATTTTTCTTCCCTGACTCTTTTTCCCTGAA
AAACTTTCAGAATATTTTTTGTAAATTATCTACTATTATCTTTTTCTTTT
TAGTCCTCCATGCTAAAACTTGTTTATAATTATTGCTATTTTTTCCGCTT
CTCTTTCATTGTTTCATCCCTCCCCCCCTGAACCCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGAATTTAAGAAAAACCCAAAGAAA
TAGCTCAATGAACCTAAAAAGAATGAATTTGAAGACAATAAACTCCTGAG
TGATCTCCAAGAAAAAAATTAAAACAAAACAAAAAAAGCCCACAAGTTTT
GGTGAAAATAATGAAGAAAATAATTAATTTGTAGAATTAAAAATAATTAG
ATAAAGGTATAGAAACATTGAAGAATAATCAAGGTGAAAAGAAGATGAAA
GTCCCATTTACCCAATTAGAAAACTCCAGGGAAAGTCTTTTTTTTTTTTT
TCCAGGTCTCATATTTATTGCCCCCCCCCCCCACTTTTAATTAGATATTT
TCTTTATTTACATTCCCCACCCCATACCATCTCCTAGTTTCTCCTCAGAA
AATCCCCTATCCCTTCCCCTGTACCCCTGCTCACCAACCTACACACTCCT
GCTTCCTGGCCCTGGCAGTCCCCTATACTGGGGCATAAAACCTTCACAGA
ACCCAAGGCCCCTAATACCTTTGATGGGCAACGAGGCCCCACTCTGTTAC
ATATGCTGTTAGAGCCTTGAGTTCCACCATCCCCCCATGTGTTTTCTTTG
TTTGGTGCTTTATACCACGATAACTCTGGTAATTAGTGTTCTTCAATTTT
TTCTTCCCTTATGGTCCTTTTATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i17.b1 MSMg01no090_i17.b1 CHROMAT_FILE:
MSMg01no090_i17.b1 PHD_FILE: MSMg01no090_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:44 2005
         (228 letters)



>mm_chr12_50489139_50489768
          Length = 630

 Score =  414 bits (214), Expect = e-120
 Identities = 220/222 (99%), Gaps = 2/222 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   attcagctttcctttc-acttttgatag-taatactgtgtttcctccgtggtagtacata 66
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 430 attcagctttcctttcaacttttgatagttaatactgtgtttcctccgtggtagtacata 371

                                                                       
Query: 67  cttattccataaataaagcccatagcagaagcaagcaatagtcatcctatttttcctcca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttattccataaataaagcccatagcagaagcaagcaatagtcatcctatttttcctcca 311

                                                                       
Query: 127 atctaaatgtaggcctttccctgtttgtctctcagctatgcaatgaagatttctttgcct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atctaaatgtaggcctttccctgtttgtctctcagctatgcaatgaagatttctttgcct 251

                                                     
Query: 187 aagcccacattccctgcctccccccttacttgtgtgtgtgtg 228
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagcccacattccctgcctccccccttacttgtgtgtgtgtg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 630
Length adjustment: 9
Effective length of query: 219
Effective length of database: 621
Effective search space:   135999
Effective search space used:   135999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)