BAC Information

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BAC

Clone NameMSMg01-090K01
Chromosome12 (Build37)
Map Location 108,507,027 - 108,507,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090K01.T7 (MSMg01no090_k01.b1)MSMg01-090K01.TJ (MSMg01no090_k01.g1)
ACCAG308808AG308809
length698735
length of high quality
(start - end)
446 (29 - 474)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no090_k01.b1 PHD_FILE: MSMg01no090_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:50 2005CHROMAT_FILE: MSMg01no090_k01.g1 PHD_FILE: MSMg01no090_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCCGCTATACGACTCCTATACGAAGAGGATCCGCGGAATTCTGTGGA
CTCGTATTTTGTGTACTCTGTATTTTTGTTTGTTTGTTTGTTTTTGGCTA
GCATCCACTTATTAGTGAGTACATACCAAGCATGTCTTTTTGGGTCTGAG
TTACCTCACTCACAATGATATTTTCTAATTCCATCCATTTGCCTGCAAAA
GTTAGGATGTCCTTGTTCTTAATAGCTGAGTAGTATTCCATTCTGTAAAT
GAACCACATTTACTGAATCCATTCTTCTGTCATTGGACATCTAGGTTGTT
TCAAGCTTCTGTCTATGTTCATAGCACAAATAAGGCCGCTATGAACATAG
TGGAACATGTGCTCCTGTGGCATGGTGGGGCATCTTTTGGGTATAGTCCC
AACATTGGTATTGCTGGGTCTTCAGGTAGATTTTATTTCTAATTTTCTGA
GGGACCTCCAGATTGATTTCCAGAGTGGCTGTACCAGTCTGTAATCCCAT
CAGTTATGGACGAGTGTTCCTCTTTCTCCACTTCCTCTCTTTCTGTGTTG
TCACCTTACGCTATGACCTTCCCCATTCTTGTTACTTGTTGTTTTTCCTC
CTTTGCCCTCCTTTAAGCAACCCTATCCCCCCTCCATCATCTCTATCAAT
CTTTTCCCCTCCCCTCTCTATATTTTCTTCTGTCTCATCTTTTTCTCC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCACACAGTGTATGGCGGCTTTTTGCCT
GCGTTGCCATGTCTCTGTACCTCAGCCTCTTCGGTTTGCTTTCTTCTTCT
CTTCCTAAGGAAGCCGGGTCTCCTCCTCAAACATCTCTGAAGCAGAGAAC
AAAGGCGGGCCGGTGTCACGGACGAATACACGGCCGTGGCAAAGTCATTA
TCACCGAAACCAAATGGAAACAAAGCAACAGCAAAATGAAAGTCCGCATA
AGGTTCTTACCGCATGGAAGCAAAGGGTAATCTCCAAATTTCCCTCAGGC
AGGAATGGTGGAGGTGGCCAGCGCNNNTTNTTTCTTNTTCCTTCCGCGTT
TTGTTTCCCCCCCCTATAAAAAAAACCTTGCGGTGGTGGGGGCGCCTCCG
GCTGATTGTTCTCTGTCGTTTTTGTTATGTCGATATCTTTTCACCTTCCT
TTAAGTAAGCAAACGACAACTCATCCCTACTGCCAGTCTCTCCCCCTCCA
TCGCTAGCTCCGCGTTACATCTCTTCCTCTTACTCCTCTTTTTTACTATG
CGTCTCCTGGCTCTTTCTTTTGTTACCTTATTGTAACTCCTCTCCCGTTT
ATTCACACCATTCCGCTTCCTTCCTCGCTATTATTCTGATTTTTTCCAGG
TTATTTTTCCTAGCGTTTCCTCCCCCTCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_k01.g1 MSMg01no090_k01.g1 CHROMAT_FILE:
MSMg01no090_k01.g1 PHD_FILE: MSMg01no090_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:50 2005
         (285 letters)



>mm_chr12_108506827_108507511
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcacacagtgtatggcggctttttgcctgcgttgccatgtctctgtacctcagcctct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtcacacagcgtatggcggctttttgcctgcgttgccatgtctctgtacctcagcctct 426

                                                                       
Query: 61  tcggtttgctttcttcttctcttcctaaggaagccgggtctcctcctcaaacatctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcggtttgctttcttcttctcttcctaaggaagccgggtctcctcctcaaacatctctga 366

                                                                       
Query: 121 agcagagaacaaaggcgggccggtgtcacggacgaatacacggccgtggcaaagtcatta 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 agcagagaacaaaggcgggccggtgtcacggacgaatgcacggccgtggcaaagtcatta 306

                                                                       
Query: 181 tcaccgaaaccaaatggaaacaaagcaacagcaaaatgaaagtccgcataaggttcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcaccgaaaccaaatggaaacaaagcaacagcaaaatgaaagtccgcataaggttcttac 246

                                                        
Query: 241 cgcatggaagcaaagggtaatctccaaatttccctcaggcaggaa 285
           |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 245 cgcatggaagcaaagggtaatctccaaattaccctcaggcaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)