BAC Information

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BAC

Clone NameMSMg01-091D17
Chromosome12 (Build37)
Map Location 118,023,477 - 118,131,945
singlet/doubletdoublet
Overlap genePtprn2
Upstream geneIgh, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091D17.T7 (MSMg01no091_d17.b1)MSMg01-091D17.TJ (MSMg01no091_d17.g1)
ACCAG309238AG309239
length713723
length of high quality
(start - end)
345 (62 - 406)147 (129 - 275)
definitionCHROMAT_FILE: MSMg01no091_d17.b1 PHD_FILE: MSMg01no091_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:40 2005CHROMAT_FILE: MSMg01no091_d17.g1 PHD_FILE: MSMg01no091_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,023,477 - 118,023,818)(118,131,799 - 118,131,945)
sequence
AATTTGCGGCGCTAAACGACTCCTATTCGGAGAGATCCGCGGAATTCATT
CATGTCACTGCACCGTGCACCTCCACTTCAACGTGGTAAGGGCAGTGCTT
GTGCTGTAAGATGACTCTTAAATAAAGAATTCAAGTTTAATAAAGCATTG
CAATTTTTTTTTTCTTCCTGGCTCCATCTTGTCAAAACACAATTCCAGCA
TGGGCAGAGACAGGCATGAAGTCCCATGCCTACCTGGGGAGTCATAGTCT
GTTGATGGCTGCTGGGAGAAGGAGTCGGTTTTCCTCAGAGATGTAGCTGG
AGAGTCTACATCTGCTCCAGTACAGGGTCCTGTATCTATGTCCATGCTGA
AAGCACACTGAAAAAAGATGGACTCTTTTTTTTTTTTAAAGATTTATTTA
TTGCATGTAAATATACTGTAGCTGTCTTCAGATACACCAGAATAGGGTAT
CAGATTTCATTTCAGGTGGTTGTGAGCCACCACGTGGTTGTTGGGATTTG
AACTCCACGACCTTTGGAAGACCACTCAGTGCTCTTATCCGCTGAGACAT
CTCGCCAGCCCCAAAATGGACTCTTATCAGAAGGAATCCACAAAACCCAT
GAAATTTGTAAAAAACCCCGCATGGCGCACAGTCAGAGGATCCCCAACCA
TCCTTCCCTAAACTATGCCTCACCCCCATATTTTACCACCCCCCCCACCA
TCTATATTTACTA
CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACGGTGCTTAGCTTTTTTCCTCTCTA
CCTTCCTTGTATGACATTGCTCCCATTGCTGTAGGTGTAGGTGAGCAGAC
TGTAGGTGCAAATGTTACCTATTTACTGAGGTGTTCTTCCAATTCTGGGT
CCCCTGCTGAAGGCACTCTTTTAGAGGTACCTACCCATCTATTCCAGGCA
GAATCCCTGGCGTTCATCTATTAGGCTACCGAAGCAACCAGGGAGGTGCG
ACACCTCTGCATTATCACAAAACTATTGAGACATAAGGTCAAGGCTGGGG
ACAAATACTCAAGAAACTGAATTACAACTTCTACAAGCCTGCAAACGCAA
AGATTTCCTCCTGCTTACAGGGTGACATGTCAAGGTACAGTCCAGCGAGA
AGGGCTATGAGGTCTATACAAAGCGCTGGTATCTCCCCAGTACACTCTTA
AGACAACTCCCATAATTGCGCCCTCTGCCTCTGTCCCATATAAGCATACC
GCCGATGACCGACAAATGATTCTCGAAAGATGTCGCCCATAACACCCTAT
CACACTCTCAGGCTCTTCACGCCCCTTATCGTCCGGTATAATTCATCACT
TTGCCCAACCTATCCCAGCCCCACGTTCTGAATTGCTTCACCTCCATTCG
CCTAACCTCCTATCCCCCACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_d17.b1 MSMg01no091_d17.b1 CHROMAT_FILE:
MSMg01no091_d17.b1 PHD_FILE: MSMg01no091_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
         (345 letters)



>mm_chr12_118023277_118024021
          Length = 745

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgtgcacctccacttcaacgtggtaagggcagtgcttgtgctgtaagatgactcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 accgtgcacctccacttcaacgtggtaagggcagtgcttgtgctgtaagatgattcttaa 260

                                                                       
Query: 61  ataaagaattcaagtttaataaagcattgcaattttttttttcttcctggctccatcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagaattcaagtttaataaagcattgcaattttttttttcttcctggctccatcttg 320

                                                                       
Query: 121 tcaaaacacaattccagcatgggcagagacaggcatgaagtcccatgcctacctggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaacacaattccagcatgggcagagacaggcatgaagtcccatgcctacctggggag 380

                                                                       
Query: 181 tcatagtctgttgatggctgctgggagaaggagtcggttttcctcagagatgtagctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatagtctgttgatggctgctgggagaaggagtcggttttcctcagagatgtagctgga 440

                                                                       
Query: 241 gagtctacatctgctccagtacagggtcctgtatctatgtccatgctgaaagcacactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtctacatctgctccagtacagggtcctgtatctatgtccatgctgaaagcacactga 500

                                                     
Query: 301 aaaaagatggactcttttttttttttaaagatttatttattg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaagatggactcttttttttttttaaagatttatttattg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no091_d17.g1 MSMg01no091_d17.g1 CHROMAT_FILE:
MSMg01no091_d17.g1 PHD_FILE: MSMg01no091_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
         (147 letters)



>mm_chr12_118131599_118132145
          Length = 547

 Score =  269 bits (139), Expect = 6e-77
 Identities = 145/147 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtaggtgtaggtgagcagactgtaggtgcaaatgttacctatttactgaggtgttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctgtaggtgtaggtgagcagactgtaggtgcaaatgttacctatttactgaggtgttctt 288

                                                                       
Query: 61  ccaattctgggtcccctgctgaaggcactcttttagaggtacctacccatctattccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccaattctgggtcccctgctgaaggcactcttttagaggtacctacccatctattccagg 228

                                      
Query: 121 cagaatccctggcgttcatctattagg 147
           |||||||| ||| ||||||||||||||
Sbjct: 227 cagaatccttggtgttcatctattagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)