BAC Information

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BAC

Clone NameMSMg01-091N07
Chromosome12 (Build37)
Map Location 100,050,396 - 100,050,498
singlet/doubletsinglet
Overlap geneEml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091N07.T7 (MSMg01no091_n07.b1)MSMg01-091N07.TJ (MSMg01no091_n07.g1)
ACCAG309675AG309676
length717715
length of high quality
(start - end)
72 (107 - 178)107 (235 - 341)
definitionCHROMAT_FILE: MSMg01no091_n07.b1 PHD_FILE: MSMg01no091_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:28 2005CHROMAT_FILE: MSMg01no091_n07.g1 PHD_FILE: MSMg01no091_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCGTCCTTTCCAAGTGCAGTTAATGTGAAGAACTCCTGGTAATTTAA
GATAACGAAAGTATTTTGATGCTATAATTTGAAAAATATATTTGAACTAA
CATACCTGTTTGTAAACTCCTTATAAGATATTGAATAGGAAATGTTTAAT
GTTTTCATTTTCAGACAGATTTGAAAGCATATGTAAACATTTAGGATTTA
TCCAATTGGCGAGCTTCCTTCACGGCAGCAAGGCTAAATGATCTTTTTTC
TAAAGGCTTCCTCAGAATTGATATGAATATGCATATTAAAACTAGTGGCC
TGACTTCTTGAAGATAATTAACGCCTGAACAGTCCATTTATAGAAATCCA
TAGCACATATGACCCGAATATTCCATATCCCTGTAACGAGGAATGCTTAC
ACCTGAATTTTCACCTATTCCGACTGGTCTACCCAGACCCCATAACCACT
TGTCTGTGCACTGTGGTCGCTGAGGCTACAGATCTCGTGCTGCAATGTTC
AGTTCTTTTCCACTCCGCCTGATAATCCGCACCTTACTTCCCCCCCCTCG
TTGTCATTATATCCTTCCCCCGCTGTATCCGTCTCACCAGTCAACCGCTA
CCTTCCATACACACAACATTTATTGTCCAAACTCTCTTTCCCATCCCCCA
CCGATCTGTTTTTTCTT
TCATCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATTCCACAATCTACCTGCTCTA
TATACACTCATGAGGGAAACCACAAGTGTTGAACTGGATAACATACTGTT
GCTACTTCCAATTGTAGGCTTTATGAAGTTTATAACTACATACCAGAATG
CAAAATTACCACTTTACCTCACCACAGTGGTCATCACATGATGCCATGAT
AACTTCATTTGCTCTTCATCAAACCAATCAAATAAACACCAAGAGGCATT
TTCTCACCTTCTTACATTATATATTCTCAGCATAATCCGTACAGCCGAGG
CCAGTACTCTTCTTAGTGTTCTGAGCTTTCCACAGCCTCAGGAAAATCAC
CCAGTTTACTCCCATCACACCCACTACTTGTTTAACAAGTCATTCACTGC
CATTTTCTAAGACAGTTATCCCAAAACATCTATTCTCATGCTGAAGGCGC
CGGAAAATAATGTCTTAATATGCACAATTACTTTCTCTCCTCATACCATG
TGTCTTTAAATACACAAAGTTTTCTTTCCAACTAAGGCCCTGTGCAGACT
CACCATTATAAACTGCTATTCTGCTGCGATTTACTCTTCCCACGATCACA
TTATTTACCGTTCGCACGTCCTATTTTTTACCACTCCGTTCCCCAAACCT
GTCTACCGCACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_n07.g1 MSMg01no091_n07.g1 CHROMAT_FILE:
MSMg01no091_n07.g1 PHD_FILE: MSMg01no091_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:28 2005
         (107 letters)



>mm_chr12_100050196_100050702
          Length = 507

 Score =  153 bits (79), Expect = 3e-42
 Identities = 97/103 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgatgccatgataacttcatttgctcttcatcaaaccaatcaaataaacaccaaga 60
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatgatgccatgagaactttatttgctcttcatcaaaccaatcaaataaacaccaaga 260

                                                      
Query: 61  ggcattttctcaccttcttacattatatattctcagcataatc 103
           |||||||||||||||||||| ||||||||| | ||| ||||||
Sbjct: 261 ggcattttctcaccttcttagattatatatacacaggataatc 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)