BAC Information

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BAC

Clone NameMSMg01-091P19
Chromosome12 (Build37)
Map Location 86,452,599 - 86,585,235
singlet/doubletdoublet
Overlap geneDlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3
Upstream geneDnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2
Downstream geneAcyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091P19.T7 (MSMg01no091_p19.b1)MSMg01-091P19.TJ (MSMg01no091_p19.g1)
ACCAG309785AG309786
length721723
length of high quality
(start - end)
349 (65 - 413)396 (76 - 471)
definitionCHROMAT_FILE: MSMg01no091_p19.b1 PHD_FILE: MSMg01no091_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:40 2005CHROMAT_FILE: MSMg01no091_p19.g1 PHD_FILE: MSMg01no091_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,452,599 - 86,452,947)(86,584,909 - 86,585,235)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAGAGATGCCAAGCAAAAGACTCCCTTAAGTATAACTGCTGTCATGTA
CTCACCCGGCGCATCCTTACTGGGTTTTGTTCAGCTTTTTGTGGTGCTGA
GGATAGAAGCTAGGGCATGGGAGGCAAGCACTTAACCACTGAGCAACACC
AGCGGCCCACGGTTACTGAATTTACACTGTCAGGGCACTGTGCTAGATGC
TCGTTAGAAATACAACAATGCAAAAAGTCTTGTCCTCCAGGAGCCTGAGG
CGTAAGGGAAAGGCATGGTGTAAATTGCTGATCATCAATCATCTAAGTGT
TTGGAAACATGGACAGAACAGGTTTAAATAGGTGACATTAAAGTTGTGGC
TTGCAGGATGTGACAGTCAGTGAAGAGAAGAAGAAGAGAGAGAAAGAAAG
GGGTAGAATGCATGAAGTCAGTGAAGAAGGAAACAGGTGTGGCATTCTTT
TGGAATTGGAAACAAAGTGACTGGTCAGAAGCCATTATTTAAAGGAAACA
GTATCTCGAGGAAGATGATGGTGTAGAGGCTTTCGGAAGTTTAGATATTT
TTTCCCTTACATTTATTTTTCTCTATGCGAACTGTGTACACACTTGGCAT
CCTGCGCTCACGGAGGCCAGAAGAGGTGCGGCATCCCTTGTAACTGCAGT
TGCCCCTTGCTTGTTAAACGC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGGAGGATTACTGAGGCAGGG
GGATTACAAGCTCAAAGCCAGCCTTGAACTACAGATTACATAGGACAAGC
CTTAGGTTTCCTTCCATAATGCTGAAGTAAAAAGAAACCAAAGCCTCAGC
TGGGCGTGGTGGTGCACGCCTTTGATCCCAGCACTCAGGAGGCAGAGGCA
GGCGGACTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGG
ACAGCTAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCAACC
AAACAAACAAACAAAGAAACCAAAGCCTCTGGCTGTATCCAGAGGGAGCT
GGGGTGGTGGCTGAAGGCTAGGCGTGGTTGAGTCTGTGTGTGCTGGACAG
AAGGCTGCAGGACTTGAGTGTGTTTGAGGGTTGAGGGTGCTCCTGGTCTA
TCTAGCCTATGTTGTTCCAACCCCTTAAGACACTGTTGGTGACAGCCTTG
GCTCTGTTTTAAGCAGAGCTCTTCTCTGCCCACACAGCTCATTTCTTCTC
AGACTTCTGCTCTGGATTTGAATTCGAATTGCGCTGAACCCAACAGATAG
GATCTGTGAGAATCTTACCGTAATTCAAATACTTAAAGTTTTAACTAGAA
CATTATATTATAAACCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_p19.b1 MSMg01no091_p19.b1 CHROMAT_FILE:
MSMg01no091_p19.b1 PHD_FILE: MSMg01no091_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:40 2005
         (349 letters)



>mm_chr12_86452399_86453147
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaaagactcccttaagtataactgctgtcatgtactcacccggcgcatccttactggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaaagactcccttaagtataactgctgtcatgtactcacccggcgcatccttactggg 260

                                                                       
Query: 61  ttttgttcagctttttgtggtgctgaggatagaagctagggcatgggaggcaagcactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgttcagctttttgtggtgctgaggatagaagctagggcatgggaggcaagcactta 320

                                                                       
Query: 121 accactgagcaacaccagcggcccacggttactgaatttacactgtcagggcactgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accactgagcaacaccagcggcccacggttactgaatttacactgtcagggcactgtgct 380

                                                                       
Query: 181 agatgctcgttagaaatacaacaatgcaaaaagtcttgtcctccaggagcctgaggcgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgctcgttagaaatacaacaatgcaaaaagtcttgtcctccaggagcctgaggcgta 440

                                                                       
Query: 241 agggaaaggcatggtgtaaattgctgatcatcaatcatctaagtgtttggaaacatggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaaaggcatggtgtaaattgctgatcatcaatcatctaagtgtttggaaacatggac 500

                                                            
Query: 301 agaacaggtttaaataggtgacattaaagttgtggcttgcaggatgtga 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaacaggtttaaataggtgacattaaagttgtggcttgcaggatgtga 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no091_p19.g1 MSMg01no091_p19.g1 CHROMAT_FILE:
MSMg01no091_p19.g1 PHD_FILE: MSMg01no091_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:41 2005
         (396 letters)



>mm_chr12_86584440_86585235
          Length = 796

 Score =  601 bits (311), Expect = e-176
 Identities = 323/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 68  ggacaagccttaggtttccttccataatgctgaagtaaaaagaaaccaaagcctcagctg 127
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 796 ggacaagccttaggtttccttccataatgctgaagtaaaaagaaaccaaagcctcagccg 737

                                                                       
Query: 128 ggcgtggtggtgcacgcctttgatcccagcactcaggaggcagaggcaggcggacttctg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggcgtggtggtgcacgcctttgatcccagcactcaggaggcagaggcaggcggacttctg 677

                                                                       
Query: 188 agttggaggccagcctggtctacaaagtgaattccaggacagctagggctacacagagaa 247
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 676 agttggaggccagcctggtctacaaagtgagttccaggacagctagggctacacagagaa 617

                                                                       
Query: 248 accctgtctcgaaaaaccaaaaccaaccaaacaaacaaacaaagaaaccaaagcctctgg 307
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 accctgtctcgaaaaaccaaaaccaaccaaccaaacaaacaaagaaaccaaagcctctgg 557

                                                                       
Query: 308 ctgtatccagagggagctggggtggtggctgaaggctaggcgtggttgagtctgtgtgtg 367
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 556 ctgtatccagagggagctggggtggtggctgaaggttaggcgtggttgagtctgtgtgtg 497

                                      
Query: 368 ctggacagaaggctgcaggacttgagt 394
           |||||||||||||||||||||||||||
Sbjct: 496 ctggacagaaggctgcaggacttgagt 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)