Query= MSMg01no092_d04.b1 MSMg01no092_d04.b1 CHROMAT_FILE:
MSMg01no092_d04.b1 PHD_FILE: MSMg01no092_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:58 2005
(265 letters)
>mm_chr12_34129790_34130454
Length = 665
Score = 441 bits (228), Expect = e-128
Identities = 256/266 (96%), Gaps = 6/266 (2%)
Strand = Plus / Plus
Query: 5 ctatttctttagggattatagtgctatttagatagtttacctgatcttg-cttaactttg 63
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctatttctttagggattatagtgctatttagatagtttacctgatcttgacttaactttg 260
Query: 64 gtaagtggtatctatc-aaaaaattgtccacttcatggatatttttcaattttgaggagt 122
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagtggtatctatcaaaaaaatcatccacttcatggatatttttcaattttgaggagt 320
Query: 123 acagttttttgaagtaagacctattttttttttttttt--ggccttcatgaatctgggtt 180
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 321 acagttttttgaagtaagacctatttttttttttttttttggcctccatgaatctgggtt 380
Query: 181 ttgcagttattatagcttatatgccaatttcatga-ttaatctttgttggatgggtgttt 239
||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 381 ttgcagttattatagcttagatgccaatttc-tgagttaatctttgttggatgggtgttt 439
Query: 240 ttgaaaatgtcccctcccccttggtt 265
||||||||||||||||||||||||||
Sbjct: 440 ttgaaaatgtcccctcccccttggtt 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no092_d04.g1 MSMg01no092_d04.g1 CHROMAT_FILE:
MSMg01no092_d04.g1 PHD_FILE: MSMg01no092_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:58 2005
(233 letters)
>mm_chr12_34286735_34287367
Length = 633
Score = 398 bits (206), Expect = e-115
Identities = 224/230 (97%)
Strand = Plus / Minus
Query: 1 acctgaaatctgcccttctgatgtcactgctcagtaagatctaaactgtatatgtaataa 60
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acctgtaatcttcccttctgatgtcactgctcagtaagatctaaactgtatatgtaataa 371
Query: 61 ccatagggtccttatttagaaatgtgatacacagcactgccttgctgagtggggtttcaa 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 370 ccatagggtccttatttagaaatgtgatatacagcactgccttgctgagtggggtttcaa 311
Query: 121 ttttaatgtctgaaattattaaaactgcaaaaataaccatatacttttcatagtggcaga 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 310 ttttaatgtctgaaattattaaaactgcagaaataaccatatacttttcatagtgacaga 251
Query: 181 tagcaattattgggggatgcttacaatatgtggatggcaaggtgctaatg 230
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 250 tagcaattattgggggatgcttagaatatgtggatggcaaggtgctaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
