BAC Information

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BAC

Clone NameMSMg01-095D23
Chromosome12 (Build37)
Map Location 35,581,746 - 35,582,059
singlet/doubletsinglet
Overlap genenone
Upstream geneFerd3l, Twist1, Hdac9, 4921508M14Rik
Downstream genePrps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D23.T7 (MSMg01no095_d23.b1)MSMg01-095D23.TJ (MSMg01no095_d23.g1)
ACCAG312207AG312208
length724721
length of high quality
(start - end)
319 (43 - 361)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no095_d23.b1 PHD_FILE: MSMg01no095_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:12 2005CHROMAT_FILE: MSMg01no095_d23.g1 PHD_FILE: MSMg01no095_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATAGTTGACTCATGGATTTGTGCTTAATTCACTAATTAACACATTTT
ACATTGTGTTCCTTCTCTTGCGGGCATCAGCTAGATAGAAACTCTGTAGG
CCAGAGAGTGTGCCCGCCGTATTGCTTTTCACAGCATGGAGTATATGCCT
CACAGCTGATGCCTCGATAATACTGTTTGATCTACCAGCTGTTTATATCT
TTTTATTTCTTATTGCATTGTGAGTCTATGAGGGCAGGAGTTGATTTGAT
TTTCTTTTTTTGAGACAGGGTTTCGCTTGTAGCCCTGGCTGTCCTAGAGC
TTGCTCTATATATCAGGCTTGAATTATAGATAGAGATCCACTCCTCAGCC
TCCCAAGTGCTGGGATTAAAGGCCTCTGCCACCACTGCTTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTTTGAGT
GAGTGTATGTAACTTGTGGTTGGGTCTCCATCTCATCTACCCCTTTCCCC
CCCCACCCCCCCTTCCTCCCTCTTTTACCTCTTTTTCCCCCCTCTCTTCA
TTCATCCTCCCCGTTATTCCACGCACTTCTTTTACTCTTCCGTTAGTCCT
GCCCCCCCTTTCCCTTCCCCCCCTCCCCACCTTTTGCCCCTCTCCCCCCG
CCGAACCTCCCCCCCCATCTTCTC
AATGAAGTGGGAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCCCAAAAGTCCCCCATACCCTCCCCC
CCACTTCCCTACCCACCCATTCCCTTTTTTTGGCCCTGGCGTTCCCCTGT
ACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGAT
GGCCGACTAGGCCATCTTTTAATACATATGCAGCTAGAGTCACTAGCAAG
CGTTGGCTGAAAATATTTGTGTTTTTTTAAGGACACCAAAATTCCAAAAT
TGTCACTAAAATAATAAATGACTCCTAATGATATTCTGCTATACTCATAG
ATTAGTGCCTTATTCTACCATGCTCACAGAAGCTTCCTCCCGCAGCAGAT
AGGAACAAATAGAGGCCCACAGATAGATAGATATGCAGATAGATGGGACT
TGGAACATACAGCTCTTAATGCGATGTCTCTGTAAAAGCTGTCCACCCAG
AGCTCAGGGGACTCCACTAGAAGAGGAGGTGGGAAGACTGTAAGAGCCAT
AGGGGAAGGAGGACATCATAAGAACAGGCCCTCTAAGTCAACTGAGTAAG
GCTCATTTATATTCACAGAGACTGAAGCAGCAGGTACAGGGCCAACTCTG
GTCTGCACCAGTTCCTCTGAGTATAGCTTTCCCATTGGCCATCTTAATGG
ACCTCCTGAATGTGTGGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d23.b1 MSMg01no095_d23.b1 CHROMAT_FILE:
MSMg01no095_d23.b1 PHD_FILE: MSMg01no095_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:12 2005
         (319 letters)



>mm_chr12_35581603_35582321
          Length = 719

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagttgactcatggatttgtgcttaattcactaattaacacattttacattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattccatagttgactcatggatttgtgcttaattcactaattaacacattttacattg 398

                                                                       
Query: 65  tgttccttctcttgcgggcatcagctagatagaaactctgtaggccagagagtgtgcccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgttccttctcttgcgggcatcagctagatagaaactctgtaggccagagagtgtgcccg 338

                                                                       
Query: 125 ccgtattgcttttcacagcatggagtatatgcctcacagctgatgcctcgataatactgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccgtattgcttttcacagcatggagtatatgcctcacagctgatgcctcgataatactgt 278

                                                                       
Query: 185 ttgatctaccagctgtttatatctttttatttcttattgcattgtgagtctatgagggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgatctaccagctgtttatatctttttatttcttattgcattgtgagtctatgagggca 218

                                                                       
Query: 245 ggagttgatttgattttctttttttgagacagggtttcgcttgtagccctggctgtccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggagttgatttgattttctttttttgagacagggtttcgcttgtagccctggctgtccta 158

                         
Query: 305 gagcttgctctata 318
           ||||||||||||||
Sbjct: 157 gagcttgctctata 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)